TkA08G026340 | RubberDandelionOmics

Gene overview

TkA08G026340

Reference: TK1151 Chr: Chr08 Coordinates: 6778326-6783047 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3650 bp · TkA08G026340|TK1151|cDNA

TTTCTCTCTACTGCTTTTCGAATTCCTGAAATTGACTGATTCAATATTCAAAAAGGATCGGCTGCGTCGCCGGAATATTCATCCCCCTCAGCAATCGCCGGACAAATAATCTATTTGTTAACTGGTTAGGTTACTCTCCTCTCTTTCATGTGTTTAATTTGTTTGCGTCCGGTGGAAAATTTCAAATTACGTTTAGTATCGTTTAAATTGTTGACTATATGAACTAATTCAATGTCGACTTTCAGTTTCGAGGTGAAATT...

CDS

Download CDS FASTA

1590 bp · TkA08G026340|TK1151|CDS

ATGGATGTATATGAATCAAATCAAGCTTTAGAGACCCGAAAGAACAATGGAAGAATTCATCGGGAAATCAGTTCCAGTTCGAGGTACAAATCACCTACACCACGGCGTTTTCCATCCCCAAATGCAAGAACAACAGTTACAAGTACAAGTACAAGTACAACGTCGGCGCCGATATCAAAGAGAGCTGTATCCGCCGGAAGAAGGCTGCGGCCAGAAACACCACCGTCTCCGTCGCCGCCGGCGTCTACCCCTTCCACTCC...

Protein

Download Protein FASTA

529 aa · TkA08G026340|TK1151|PROTEIN

MDVYESNQALETRKNNGRIHREISSSSRYKSPTPRRFPSPNARTTVTSTSTSTTSAPISKRAVSAGRRLRPETPPSPSPPASTPSTPVHDTSIYTDLAARKASSSKLPESLWPSRMRSLNVAFQSNAFSMPISKKEKPPPQVIFDRTLKPSSNVGYKPTVTPPTYRKATPERNRSPLKGKNTIDHLENSKPFDRFDHHRWPNRTGSNSNVLAKNNDLPGSPVTPKSTNDSPRKISSLSHNPHRVSNVFAEKNAVRSQSPR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G026340`
TK1151 ID	TkA08G026340
OH-1004 ID	LXL04_018111
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G026340

Location Chr08:6778326-6783047 (+)

Description Similar to QWRF4: QWRF motif-containing protein 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g30710`	Contributes to the assembly of the acentrosomal spindle and phragmoplast microtubule arrays as part of the augmin complex.	Characterization of the Arabidopsis augmin complex uncovers its critical function in the assembly of the acentrosomal spindle and phragmoplast microtubule arrays.2012 · DOI: 10.1105/tpc.112.096610
`At2g24070`	QWRF motif-containing protein 4.	No verified direct reference in this release
`At1g49890`	QWRF motif-containing protein 2.	No verified direct reference in this release
`At3g19570`	Probable microtubule-associated peroxisomal protein required for chloroplast biogenesis and for the formation of the prolamellar body and prothylakoids in etioplasts.	No verified direct reference in this release
`At5g43160`	QWRF motif-containing protein 9.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018111 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009658 chloroplast organization Biological Process

GO:0051225 spindle assembly Biological Process

GO:0051301 cell division Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005874 microtubule Cellular Component

GO:0005880 nuclear microtubule Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0008017 microtubule binding Molecular Function

KEGG gene cross-reference

ath:AT2G24070

ath:AT3G19570

ath:AT4G30710

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.645

Rank 1 · TkA08G026340 · TK1151

Nucleus0.314

Rank 2 · TkA08G026340 · TK1151

Cell membrane0.149

Rank 3 · TkA08G026340 · TK1151

Endoplasmic reticulum0.037

Rank 4 · TkA08G026340 · TK1151

Plastid0.037

Rank 5 · TkA08G026340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04484QWRF17-108 aa

PF04484QWRF208-496 aa

PF08824Serine_rich347-362 aa

PF08824Serine_rich451-508 aa

PF06627DUF1153459-515 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G026340	`PF04484`	QWRF	17	108	1.2e-77	262.3
TkA08G026340	`PF04484`	QWRF	208	496	1.2e-77	262.3
TkA08G026340	`PF08824`	Serine_rich	347	362	0.036	14.7
TkA08G026340	`PF08824`	Serine_rich	451	508	0.036	14.7
TkA08G026340	`PF06627`	DUF1153	459	515	0.034	15.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SUH5`	Arabidopsis thaliana	sp\|Q9SUH5\|AUG8_ARATH AUGMIN subunit 8	37.800%	Swiss-Prot	Medium
`F4INP9`	Arabidopsis thaliana	sp\|F4INP9\|QWRF4_ARATH QWRF motif-containing protein 4	40.800%	Swiss-Prot	Medium
`Q94AI1`	Arabidopsis thaliana	sp\|Q94AI1\|QWRF2_ARATH QWRF motif-containing protein 2	41.600%	Swiss-Prot	Medium
`Q8GXD9`	Arabidopsis thaliana	sp\|Q8GXD9\|SCO3_ARATH Protein SNOWY COTYLEDON 3	46.100%	Swiss-Prot	Low
`F4K4M0`	Arabidopsis thaliana	sp\|F4K4M0\|QWRF9_ARATH QWRF motif-containing protein 9	44.200%	Swiss-Prot	Low

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