TkA08G022540 | RubberDandelionOmics

Gene overview

TkA08G022540

Reference: TK1151 Chr: Chr08 Coordinates: 5723946-5725091 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1146 bp · TkA08G022540|TK1151|cDNA

ATGGGGAACGCAAAAAAATGGATCAAGAATTTGTTGGCCGGAAAGAAACACAAAAAAGCCGTCAACGAAATACAAACACCACCCATTTCCGTCTCACCGGCAACCCCAAAGGAAAAACGTAGATGGAGCTTCCGGCGGTCTTCCGCCACACCGCCCACTAACACCACCACCACCACCACCACCACCACCAACTCCATAGACGTAATCTCCATAGCACCACCACCATTAGTGCATGAAGTGGAGAATTACGAGCAGAAGAA...

CDS

Download CDS FASTA

1146 bp · TkA08G022540|TK1151|CDS

ATGGGGAACGCAAAAAAATGGATCAAGAATTTGTTGGCCGGAAAGAAACACAAAAAAGCCGTCAACGAAATACAAACACCACCCATTTCCGTCTCACCGGCAACCCCAAAGGAAAAACGTAGATGGAGCTTCCGGCGGTCTTCCGCCACACCGCCCACTAACACCACCACCACCACCACCACCACCACCAACTCCATAGACGTAATCTCCATAGCACCACCACCATTAGTGCATGAAGTGGAGAATTACGAGCAGAAGAA...

Protein

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381 aa · TkA08G022540|TK1151|PROTEIN

MGNAKKWIKNLLAGKKHKKAVNEIQTPPISVSPATPKEKRRWSFRRSSATPPTNTTTTTTTTTNSIDVISIAPPPLVHEVENYEQKKHVLEVAFVAAATAIVKHTAATKIQSVFRSYLARKALYALKGLVKLQALVRGHLVRKRATATLRCMQALVTVQARACARRRGSTDGITNSYYGWPDSDSDLYHVMRTPDVSEEHIKIVEMDTRSTRKSYSKERVSMHMISPAPSEPSPRAFGGHFEDFRLGSPTMKHDYAESLY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G022540`
TK1151 ID	TkA08G022540
OH-1004 ID	LXL04_018169
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G022540

Location Chr08:5723946-5725091 (-)

Description Similar to IQD31: Protein IQ-DOMAIN 31

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g14750`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At4g29150`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At1g01110`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At4g00820`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At4g23060`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018169 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0010091 trichome branching Biological Process

GO:0051592 response to calcium ion Biological Process

GO:0005634 nucleus Cellular Component

GO:0005635 nuclear envelope Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005856 cytoskeleton Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009524 phragmoplast Cellular Component

GO:0009574 preprophase band Cellular Component

GO:0016604 nuclear body Cellular Component

GO:0005516 calmodulin binding Molecular Function

KEGG gene cross-reference

ath:AT1G72670

ath:AT3G16490

ath:AT4G14750

ath:AT5G07240

ath:AT5G62070

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.412

Rank 1 · TkA08G022540 · TK1151

Cytoplasm0.387

Rank 2 · TkA08G022540 · TK1151

Nucleus0.364

Rank 3 · TkA08G022540 · TK1151

Endoplasmic reticulum0.046

Rank 4 · TkA08G022540 · TK1151

Plastid0.033

Rank 5 · TkA08G022540 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13178DUF400543-51 aa

PF00612IQ105-122 aa

PF00612IQ130-144 aa

PF13178DUF4005248-311 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G022540	`PF13178`	DUF4005	43	51	1.5e-10	42.3
TkA08G022540	`PF00612`	IQ	105	122	2.7e-11	42.9
TkA08G022540	`PF00612`	IQ	130	144	2.7e-11	42.9
TkA08G022540	`PF13178`	DUF4005	248	311	1.5e-10	42.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`A0A1P8B590`	Arabidopsis thaliana	sp\|A0A1P8B590\|IQD19_ARATH Protein IQ-DOMAIN 19	45.000%	Swiss-Prot	Medium
`F4JMV6`	Arabidopsis thaliana	sp\|F4JMV6\|IQD25_ARATH Protein IQ-DOMAIN 25	35.500%	Swiss-Prot	Low
`Q9MAM4`	Arabidopsis thaliana	sp\|Q9MAM4\|IQD18_ARATH Protein IQ-DOMAIN 18	66.200%	Swiss-Prot	Low
`F4JHN2`	Arabidopsis thaliana	sp\|F4JHN2\|IQD17_ARATH Protein IQ-DOMAIN 17	66.200%	Swiss-Prot	Low
`Q2NNE0`	Arabidopsis thaliana	sp\|Q2NNE0\|IQD22_ARATH Protein IQ-DOMAIN 22	34.200%	Swiss-Prot	Medium

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