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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G020090
Reference: TK1151 Chr: Chr08 Coordinates: 5017834-5020168 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2001 bp · TkA08G020090|TK1151|cDNA

ATGGCAAACATTGATGTGGATGAGGAGTGGATTGGAGATACATCTGAACCAGTAATACCAGAAGAGTCACAATGTGAAGAACCAACAGTTGAGGTACTGAACAACGATGAACTGGTTTCAGGGTCTTCATCAGATGATGGAGAAACCAACATTAGAAAGAAGTCGATTAGAAAAATTCAAAGAGCACATGCGAATGAGAATGCCACAGTCAGTGACCCATTTTACCTTTTCCAAACGTTTTCCTCAGCTGAAGAGGTGAA...

CDS

Download CDS FASTA

2001 bp · TkA08G020090|TK1151|CDS

ATGGCAAACATTGATGTGGATGAGGAGTGGATTGGAGATACATCTGAACCAGTAATACCAGAAGAGTCACAATGTGAAGAACCAACAGTTGAGGTACTGAACAACGATGAACTGGTTTCAGGGTCTTCATCAGATGATGGAGAAACCAACATTAGAAAGAAGTCGATTAGAAAAATTCAAAGAGCACATGCGAATGAGAATGCCACAGTCAGTGACCCATTTTACCTTTTCCAAACGTTTTCCTCAGCTGAAGAGGTGAA...

Protein

Download Protein FASTA

666 aa · TkA08G020090|TK1151|PROTEIN

MANIDVDEEWIGDTSEPVIPEESQCEEPTVEVLNNDELVSGSSSDDGETNIRKKSIRKIQRAHANENATVSDPFYLFQTFSSAEEVKEKVKEHAIETRRELVFAKNDKTRVRVVCNGSNPTLVPGQKEVKNDFICPWVLLVSKCKRDTDWVVKTYRKVHQCLQTRKVKACTYHFLAKQIVHQVEVNPEIPIRALQEELQRNYQLSISEMKVFRAKEEARKKIQGDYGGQYALLRDYAMELQQRNPGTTIKIDVETNCNPA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G020090
TK1151 IDTkA08G020090
OH-1004 IDLXL04_018210
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)93.800
Protein coverage (%)TK1151 97.598 / OH-1004 71.384
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G020090
LocationChr08:5017834-5020168 (+)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018210 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)No functional description available
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.956
Rank 1 · TkA08G020090 · TK1151
Cytoplasm0.101
Rank 2 · TkA08G020090 · TK1151
Cell membrane0.022
Rank 3 · TkA08G020090 · TK1151
Mitochondrion0.016
Rank 4 · TkA08G020090 · TK1151
Endoplasmic reticulum0.014
Rank 5 · TkA08G020090 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01498HTH_Tnp_Tc3_252-72 aa
PF03108DBD_Tnp_Mut78-118 aa
PF03108DBD_Tnp_Mut135-146 aa
PF10551MULE137-170 aa
PF00872Transposase_mut151-202 aa
PF28914Trissin163-184 aa
PF01498HTH_Tnp_Tc3_2178-211 aa
PF28914Trissin255-278 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G020090PF01498HTH_Tnp_Tc3_252720.04914.6
TkA08G020090PF03108DBD_Tnp_Mut781183.3e-0524.2
TkA08G020090PF03108DBD_Tnp_Mut1351463.3e-0524.2
TkA08G020090PF10551MULE1371701.2e-1764.7
TkA08G020090PF00872Transposase_mut1512021.6e-0524.7
TkA08G020090PF28914Trissin1631840.02415.3
TkA08G020090PF01498HTH_Tnp_Tc3_21782110.04914.6
TkA08G020090PF28914Trissin2552780.02415.3
TkA08G020090PF10551MULE2883831.2e-1764.7
TkA08G020090PF00872Transposase_mut3044611.6e-0524.7
TkA08G020090PF10551MULE4094281.2e-1764.7
TkA08G020090PF28914Trissin6016220.02415.3
TkA08G020090PF15288zf-CCHC_66146280.2611.9
TkA08G020090PF00098zf-CCHC6156300.02715.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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