Gene Card
Gene overview
cDNA / CDS / Protein Sequences
859 bp · TkA08G019440|TK1151|cDNA
AACCCATCATACAACATACCCAAATCCTTTCATATTCCTTGATACTGTTGATTCGAAATCTGCAAAGAATAGAAAAAAAAATGGAGCTTCATTTGGGTCTTGCTCTTTCTTCATCTTCTTCATCTGCATCTTCGAAGTTTGATCTCAACTGCAACGATGAATCTGTTATCCCAATTTATCATTTGAAGAAGAGGAAACAGGATGATGATGATGATGATGGTGATCTTCATGTTCTTCAAACACTACCTCTTCTTGTGTGG...
636 bp · TkA08G019440|TK1151|CDS
ATGGAGCTTCATTTGGGTCTTGCTCTTTCTTCATCTTCTTCATCTGCATCTTCGAAGTTTGATCTCAACTGCAACGATGAATCTGTTATCCCAATTTATCATTTGAAGAAGAGGAAACAGGATGATGATGATGATGATGGTGATCTTCATGTTCTTCAAACACTACCTCTTCTTGTGTGGAATAATTTATGCGACAAAACTCAGTTGAATCAACAGCTCCATGATGATGCTGATGATGATGATGATGATGACGACGACGG...
Protein
Download Protein FASTA211 aa · TkA08G019440|TK1151|PROTEIN
MELHLGLALSSSSSSASSKFDLNCNDESVIPIYHLKKRKQDDDDDDGDLHVLQTLPLLVWNNLCDKTQLNQQLHDDADDDDDDDDDGEVQSNSVFVHRRDDGGVVGWPPVKSCRKKLCHPKTYNYGGGGGGSKSMYVKVHMEGMGIARKVDLNLHHSYQTLVHTLANMFGKSYEDVKLAYQDKEGDWLLAGDVPWGSFVETIKRLKLMKKQ
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA08G019440 |
|---|---|
| TK1151 ID | TkA08G019440 |
| OH-1004 ID | LXL04_018228 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 93.700 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA08G019440 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr08:4850403-4852338 (-) | |||||||||
| Description | Similar to IAA29: Auxin-responsive protein IAA29 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0009635 response to herbicide Biological Process GO:0009733 response to auxin Biological Process GO:0009734 auxin-activated signaling pathway Biological Process GO:0010102 lateral root morphogenesis Biological Process GO:0010114 response to red light Biological Process GO:0010218 response to far red light Biological Process GO:0010583 response to cyclopentenone Biological Process GO:0005634 nucleus Cellular Component GO:0000976 transcription cis-regulatory region binding Molecular Function GO:0003677 DNA binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT4G32280 ath:AT5G25890 ath:AT5G43700 vra:106757071 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF02309AUX_IAA2-171 aaPF11595DUF324536-48 aaPF14812PBP1_TM37-48 aaPF06524NOA3638-88 aaPF11595DUF324568-93 aaPF14812PBP1_TM70-90 aaPF00564PB1147-188 aaPF02309AUX_IAA175-210 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA08G019440 | PF02309 | AUX_IAA | 2 | 171 | 6.9e-36 | 124.8 |
| TkA08G019440 | PF11595 | DUF3245 | 36 | 48 | 3.6 | 8.8 |
| TkA08G019440 | PF14812 | PBP1_TM | 37 | 48 | 1.6 | 9.8 |
| TkA08G019440 | PF06524 | NOA36 | 38 | 88 | 2.1 | 8.4 |
| TkA08G019440 | PF11595 | DUF3245 | 68 | 93 | 3.6 | 8.8 |
| TkA08G019440 | PF14812 | PBP1_TM | 70 | 90 | 1.6 | 9.8 |
| TkA08G019440 | PF00564 | PB1 | 147 | 188 | 0.00048 | 20.7 |
| TkA08G019440 | PF02309 | AUX_IAA | 175 | 210 | 6.9e-36 | 124.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.