TkA08G016920 | RubberDandelionOmics

Gene overview

TkA08G016920

Reference: TK1151 Chr: Chr08 Coordinates: 4186351-4187630 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1034 bp · TkA08G016920|TK1151|cDNA

GTGCCACTCCCCATCCTCCATTCTCCTCATCTCTGCTTCACTCTCTCAATTTCTTTAATAAAATAATAATTTAACAATATTCCAAAATGCCTGGAATTGCATTTGGTCGTTTTGATGACTCCTTCAGCTTTGGCTCCATCAAAGCTTACATCGCAGAGTTCATCTCCACCCTCCTCTTTGTCTTCGCCGGCGTCGGCTCCGCCATCGCTTACGGCAAGTTGACGGCCGACGCCGCCCTTGACCCAGCGGGTCTTGTCGCA...

CDS

Download CDS FASTA

747 bp · TkA08G016920|TK1151|CDS

ATGCCTGGAATTGCATTTGGTCGTTTTGATGACTCCTTCAGCTTTGGCTCCATCAAAGCTTACATCGCAGAGTTCATCTCCACCCTCCTCTTTGTCTTCGCCGGCGTCGGCTCCGCCATCGCTTACGGCAAGTTGACGGCCGACGCCGCCCTTGACCCAGCGGGTCTTGTCGCAATCGCCGTTTGCCATGGATTTGCGCTTTTCGTCGCCGTTTCCATCGCCGCTAACATCTCCGGCGGCCACGTCAACCCCGCTGTCAC...

Protein

Download Protein FASTA

248 aa · TkA08G016920|TK1151|PROTEIN

MPGIAFGRFDDSFSFGSIKAYIAEFISTLLFVFAGVGSAIAYGKLTADAALDPAGLVAIAVCHGFALFVAVSIAANISGGHVNPAVTFGLAVGGQITILTGIFYWIAQLVGSVAACYLLSFVTGGLAVPTHAVAAGVGSIQGVVMEIIITFALVYTVYATACDPKKGALGTIAPMAIGFIVGANILAAGAFSGGSMNPARSFGPAVASGDFSGHWIYWVGPLIGGGLAGLIYPNVFMNHDHAPLSSEF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G016920`
TK1151 ID	TkA08G016920
OH-1004 ID	LXL04_002110
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G016920

Location Chr08:4186351-4187630 (+)

Description Similar to TIP2-1: Aquaporin TIP2-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g16240`	Aquaporin required to facilitate the transport of water from the vacuolar compartment to the cytoplasm.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0336200`	Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002110 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006833 water transport Biological Process

GO:0019755 one-carbon compound transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0000326 protein storage vacuole Cellular Component

GO:0005774 vacuolar membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT3G16240

ath:AT5G47450

dosa:Os06g0336200

zma:541895

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.620

Rank 1 · TkA08G016920 · TK1151

Cell membrane0.175

Rank 2 · TkA08G016920 · TK1151

Endoplasmic reticulum0.115

Rank 3 · TkA08G016920 · TK1151

Cytoplasm0.086

Rank 4 · TkA08G016920 · TK1151

Golgi apparatus0.050

Rank 5 · TkA08G016920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03249TSA8-81 aa

PF00230MIP16-232 aa

PF23788EDRF1_N72-119 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G016920	`PF03249`	TSA	8	81	0.031	13.7
TkA08G016920	`PF00230`	MIP	16	232	5.2e-78	262.5
TkA08G016920	`PF23788`	EDRF1_N	72	119	0.21	11.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q41951`	Arabidopsis thaliana	sp\|Q41951\|TIP21_ARATH Aquaporin TIP2-1	84.200%	Swiss-Prot	High
`Q5Z6F0`	Oryza sativa subsp. japonica	sp\|Q5Z6F0\|TIP22_ORYSJ Probable aquaporin TIP2-2	77.600%	Swiss-Prot	High

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