TkA08G000790 | RubberDandelionOmics

Gene overview

TkA08G000790

Reference: TK1151 Chr: Chr08 Coordinates: 193552-194727 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1032 bp · TkA08G000790|TK1151|cDNA

ATGGCGAATGAATCGTTCACCAAGATGTCGGAAGAATCCGGGTTTTTTCAGCAAGATACGTTGCAGTTCCAGAAAAGGATCTCCACGCGGTCAGGTTTAGGGGACGAGACGTATCTTCCCGAAGGGATCACCGCTCGACCCCCACAATTGAACATGAAAGAAGCCCGTGCCGAGGCGGAGCTTGTCATGTTTGGTGCCCTAGACTCCCTCTTCACCAAGACCGGTGTTAGACCACAAGAGCTCCGACCAGATATCATGAG...

CDS

Download CDS FASTA

1032 bp · TkA08G000790|TK1151|CDS

ATGGCGAATGAATCGTTCACCAAGATGTCGGAAGAATCCGGGTTTTTTCAGCAAGATACGTTGCAGTTCCAGAAAAGGATCTCCACGCGGTCAGGTTTAGGGGACGAGACGTATCTTCCCGAAGGGATCACCGCTCGACCCCCACAATTGAACATGAAAGAAGCCCGTGCCGAGGCGGAGCTTGTCATGTTTGGTGCCCTAGACTCCCTCTTCACCAAGACCGGTGTTAGACCACAAGAGCTCCGACCAGATATCATGAG...

Protein

Download Protein FASTA

343 aa · TkA08G000790|TK1151|PROTEIN

MANESFTKMSEESGFFQQDTLQFQKRISTRSGLGDETYLPEGITARPPQLNMKEARAEAELVMFGALDSLFTKTGVRPQELRPDIMSFNLGGMGCSAGLISIDLAQHLLKANLNTYAVVLSMENITLNWYSGNDRSMLLCNCIFRMGGAAMLLSNKSRDRCRSKYELAHTVRTHKGADDNSYNCVYQREDDKGIVGVSLARELMAVAGDALKTNITTLGPLVLPFSEQLIFFLTLVKRKVFKMKVKPYIPDFKLAFEHFC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G000790`
TK1151 ID	TkA08G000790
OH-1004 ID	LXL04_026615
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	87.400
Protein coverage (%)	TK1151 97.376 / OH-1004 61.812 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G000790

Location Chr08:193552-194727 (+)

Description Similar to KCS1: 3-ketoacyl-CoA synthase 1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g01120`	Contributes to cuticular wax and suberin biosynthesis.	KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.1999 · DOI: 10.1046/j.1365-313x.1999.00352.x Specific and differential inhibition of very-long-chain fatty acid elongases from Arabidopsis thaliana by different herbicides.2004 · DOI: 10.1073/pnas.0404600101 Substrate specificity of Arabidopsis 3-ketoacyl-CoA synthases.2006 · DOI: 10.1016/j.bbrc.2006.05.162
`At2g26640`	Active on both saturated and mono-unsaturated acyl chains C16 to C20.	Substrate specificity of Arabidopsis 3-ketoacyl-CoA synthases.2006 · DOI: 10.1016/j.bbrc.2006.05.162
`At1g04220`	Mediates the synthesis of VLCFAs from 22 to 26 carbons in length (e.g. C22, C24, C26).	Specific and differential inhibition of very-long-chain fatty acid elongases from Arabidopsis thaliana by different herbicides.2004 · DOI: 10.1073/pnas.0404600101 The DAISY gene from Arabidopsis encodes a fatty acid elongase condensing enzyme involved in the biosynthesis of aliphatic suberin in roots and the chalaza-micropyle region of seeds.2009 · DOI: 10.1111/j.1365-313x.2008.03674.x Two Arabidopsis 3-ketoacyl CoA synthase genes, KCS20 and KCS2/DAISY, are functionally redundant in cuticular wax and root suberin biosynthesis, but differentially controlled by osmotic stress.2009 · DOI: 10.1111/j.1365-313x.2009.03973.x
`At5g43760`	Mediates the synthesis of VLCFAs from 22 to 26 carbons in length (e.g. C22, C24, C26).	Specific and differential inhibition of very-long-chain fatty acid elongases from Arabidopsis thaliana by different herbicides.2004 · DOI: 10.1073/pnas.0404600101
`At2g46720`	Contributes to cuticular wax and suberin biosynthesis (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026615 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000038 very long-chain fatty acid metabolic process Biological Process

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009409 response to cold Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009611 response to wounding Biological Process

GO:0010025 wax biosynthetic process Biological Process

GO:0010345 suberin biosynthetic process Biological Process

GO:0030497 fatty acid elongation Biological Process

GO:0042761 very long-chain fatty acid biosynthetic process Biological Process

GO:0070417 cellular response to cold Biological Process

GO:0160062 cutin-based cuticle development Biological Process

KEGG gene cross-reference

ath:AT1G01120

ath:AT1G04220

ath:AT1G19440

ath:AT2G26640

ath:AT5G43760

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.646

Rank 1 · TkA08G000790 · TK1151

Cytoplasm0.110

Rank 2 · TkA08G000790 · TK1151

Mitochondrion0.075

Rank 3 · TkA08G000790 · TK1151

Cell membrane0.065

Rank 4 · TkA08G000790 · TK1151

Nucleus0.053

Rank 5 · TkA08G000790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08392FAE1_CUT1_RppA3-80 aa

PF08392FAE1_CUT1_RppA80-240 aa

PF08545ACP_syn_III94-159 aa

PF08541ACP_syn_III_C257-279 aa

PF08541ACP_syn_III_C283-315 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G000790	`PF08392`	FAE1_CUT1_RppA	3	80	4.5e-101	338.7
TkA08G000790	`PF08392`	FAE1_CUT1_RppA	80	240	4.5e-101	338.7
TkA08G000790	`PF08545`	ACP_syn_III	94	159	0.16	12.6
TkA08G000790	`PF08541`	ACP_syn_III_C	257	279	0.00031	21.5
TkA08G000790	`PF08541`	ACP_syn_III_C	283	315	0.00031	21.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9MAM3`	Arabidopsis thaliana	sp\|Q9MAM3\|KCS1_ARATH 3-ketoacyl-CoA synthase 1	66.300%	Swiss-Prot	High
`O48780`	Arabidopsis thaliana	sp\|O48780\|KCS11_ARATH 3-ketoacyl-CoA synthase 11	60.700%	Swiss-Prot	High
`Q5XEP9`	Arabidopsis thaliana	sp\|Q5XEP9\|KCS2_ARATH 3-ketoacyl-CoA synthase 2	60.100%	Swiss-Prot	High
`Q9FG87`	Arabidopsis thaliana	sp\|Q9FG87\|KCS20_ARATH 3-ketoacyl-CoA synthase 20	59.900%	Swiss-Prot	High
`Q9ZUZ0`	Arabidopsis thaliana	sp\|Q9ZUZ0\|KCS13_ARATH 3-ketoacyl-CoA synthase 13	55.600%	Swiss-Prot	High

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