TkA07G442840 | RubberDandelionOmics

Gene overview

TkA07G442840

Reference: TK1151 Chr: Chr07 Coordinates: 112224981-112228191 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1346 bp · TkA07G442840|TK1151|cDNA

CGACAGTCAACCAATTGCTTTTCAGAAGTCAGCAGTATAGTCAGAAGTTAAATTCACTTGAAAATTCAACACTAAATTCCAATGAATTTTGCCAAAAAATTGCTCCACTTCCAACAAGTTTTCGGGTCTCGAATCCTGATATATATTCAGCTAATTACATTCCCCAAGTTCCCTCCCTTCAATTTTCACAAGATAGTAGCTTCCGCCATTCAAATACCAACCCCATATTCTTCAATTTAAACCATCTTTCACTCTCTCTA...

CDS

Download CDS FASTA

843 bp · TkA07G442840|TK1151|CDS

ATGGCGAGTTCGTTATCGAAAACCTCTTGCTTTCAATGCCAGGATTCAACCTCCAGCTGCTTCAGAAACGGATGGAGACTACGCAATGGAGATCGCGCTAACCTCTGCTATCAGTGTTCTTGTGTTTATGAAGAAGGGAGGTTCTGTGAAACATTTCATTCAAACGATGATGGTTGGAGAGATTGTGAATCTTGTGGGAAGTTGGTACATTGTGGATGTGTTGTATCATTCAATCAATATTTTCTGCTGGATTTTGGTGG...

Protein

Download Protein FASTA

280 aa · TkA07G442840|TK1151|PROTEIN

MASSLSKTSCFQCQDSTSSCFRNGWRLRNGDRANLCYQCSCVYEEGRFCETFHSNDDGWRDCESCGKLVHCGCVVSFNQYFLLDFGGVICRECSKKNLKLARNQRYAREFQADPTDVPDIAKRIQIEPHYWQDGNGNVSDIKCISRTTKPFLNPLFEKILTASDADTKLGRIVIPKRYAEAFFPEVCEPKGIILNILDMENKVWGLSFRYWPNCGSKTYVLEGLRDFMVSRKLLAGDTVSFYSVEPGGKMAIGFRKKSVT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G442840`
TK1151 ID	TkA07G442840
OH-1004 ID	LXL04_030977
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G442840

Location Chr07:112224981-112228191 (+)

Description Similar to Os07g0679700: B3 domain-containing protein Os07g0679700

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g32010`	Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3.	Repression of the LEAFY COTYLEDON 1/B3 regulatory network in plant embryo development by VP1/ABSCISIC ACID INSENSITIVE 3-LIKE B3 genes.2007 · DOI: 10.1104/pp.106.092320
`At2g30470`	Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3.	Analysis of a sugar response mutant of Arabidopsis identified a novel B3 domain protein that functions as an active transcriptional repressor.2005 · DOI: 10.1104/pp.104.057752 Repression of the LEAFY COTYLEDON 1/B3 regulatory network in plant embryo development by VP1/ABSCISIC ACID INSENSITIVE 3-LIKE B3 genes.2007 · DOI: 10.1104/pp.106.092320 Two B3 domain transcriptional repressors prevent sugar-inducible expression of seed maturation genes in Arabidopsis seedlings.2007 · DOI: 10.1073/pnas.0607940104
`At4g21550`	May be involved in plant development.	Repression of the LEAFY COTYLEDON 1/B3 regulatory network in plant embryo development by VP1/ABSCISIC ACID INSENSITIVE 3-LIKE B3 genes.2007 · DOI: 10.1104/pp.106.092320

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0563300`	B3 domain-containing protein Os07g0563300.	No verified direct reference in this release
`Os07g0679700`	B3 domain-containing protein Os07g0679700.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030977 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT4G32010

dosa:Os07g0563300

dosa:Os07g0679700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.955

Rank 1 · TkA07G442840 · TK1151

Cytoplasm0.098

Rank 2 · TkA07G442840 · TK1151

Cell membrane0.023

Rank 3 · TkA07G442840 · TK1151

Endoplasmic reticulum0.014

Rank 4 · TkA07G442840 · TK1151

Plastid0.011

Rank 5 · TkA07G442840 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25813zf_VAL1_N9-16 aa

PF13240Zn_Ribbon_129-39 aa

PF25813zf_VAL1_N51-97 aa

PF13240Zn_Ribbon_154-67 aa

PF13240Zn_Ribbon_190-98 aa

PF30515RBP_Asl388896-115 aa

PF25813zf_VAL1_N138-145 aa

PF02362B3156-257 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G442840	`PF25813`	zf_VAL1_N	9	16	2.7e-22	79.1
TkA07G442840	`PF13240`	Zn_Ribbon_1	29	39	3.9	8.0
TkA07G442840	`PF25813`	zf_VAL1_N	51	97	2.7e-22	79.1
TkA07G442840	`PF13240`	Zn_Ribbon_1	54	67	3.9	8.0
TkA07G442840	`PF13240`	Zn_Ribbon_1	90	98	3.9	8.0
TkA07G442840	`PF30515`	RBP_Asl3888	96	115	0.22	13.0
TkA07G442840	`PF25813`	zf_VAL1_N	138	145	2.7e-22	79.1
TkA07G442840	`PF02362`	B3	156	257	5.3e-11	43.0
TkA07G442840	`PF03754`	At2g31720-like	156	175	0.25	11.9
TkA07G442840	`PF03754`	At2g31720-like	190	250	0.25	11.9
TkA07G442840	`PF13240`	Zn_Ribbon_1	212	217	3.9	8.0
TkA07G442840	`PF30515`	RBP_Asl3888	254	259	0.22	13.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q5CCK4`	Arabidopsis thaliana	sp\|Q5CCK4\|VAL2_ARATH B3 domain-containing transcription repressor VAL2	29.600%	Swiss-Prot	Low
`Q8W4L5`	Arabidopsis thaliana	sp\|Q8W4L5\|VAL1_ARATH B3 domain-containing transcription repressor VAL1	27.200%	Swiss-Prot	Low
`O65420`	Arabidopsis thaliana	sp\|O65420\|VAL3_ARATH B3 domain-containing transcription factor VAL3	39.600%	Swiss-Prot	Medium
`Q0D5G4`	Oryza sativa subsp. japonica	sp\|Q0D5G4\|Y7633_ORYSJ B3 domain-containing protein Os07g0563300	24.800%	Swiss-Prot	Low
`Q6Z3U3`	Oryza sativa subsp. japonica	sp\|Q6Z3U3\|Y7797_ORYSJ B3 domain-containing protein Os07g0679700	45.700%	Swiss-Prot	Medium

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