TkA07G442780 | RubberDandelionOmics

Gene overview

TkA07G442780

Reference: TK1151 Chr: Chr07 Coordinates: 112198929-112205782 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4725 bp · TkA07G442780|TK1151|cDNA

AAATGAAAGTACATGATGAAGAACATTCCTTCAATTTGCCATAAATTACATTTCACTGCCACTATCTTTGTTCATCTTGCCACATTTACCATCAAATCGCAGTTCAATCGTCATACGACCCCCGCGCCACCACTACCTTCTTGAAAAATTCAAAATTTCCTTCAAACATCAAACAAACCCCAAATAAATCTTCATGGGTTTTCCTTTTTCAGACTAAATTTTATGAATTTAGGAACAGCCACGACAGGCTTTTTCATAAA...

CDS

Download CDS FASTA

3579 bp · TkA07G442780|TK1151|CDS

ATGTTACTTTCTCCACACCCGGTAGCTCGGAGCTCTTTGGAGGAAATGCTCGACTCTCTTCGTCGGAGAGACGAGGAAGAAGATGAAGACTTGCCGCCGGCGTTGCCGAAACGGCCAACCTCCAGGGCACGCCTCCCTAAACGGCTGCTTCCGGTCAAGCTTGATGTTGAATATGTCCCGCCTCCAGATTTCACCAACATCAAAAAGCAAGATATTGAATGTGTTACCAGCGGCATCTGTAATTTCGGTCTGAAAAGAGT...

Protein

Download Protein FASTA

1192 aa · TkA07G442780|TK1151|PROTEIN

MLLSPHPVARSSLEEMLDSLRRRDEEEDEDLPPALPKRPTSRARLPKRLLPVKLDVEYVPPPDFTNIKKQDIECVTSGICNFGLKRVTAGESPYAMAPVCQQRLVDDGGATLATPTTSHETDWDDSICYFVKKKLRVWCRPRNEQWELAKIKSTVGDEASVMLLDGSVMTVSTGDLLPANPEVLDGVDDLVELGYLNEPSVLHNLQYRYARDEIYSKAGPVLLAINPFKDVQIYGDDYVTAYRERILDNPHVYATADTAY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G442780`
TK1151 ID	TkA07G442780
OH-1004 ID	LXL04_030975
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G442780

Location Chr07:112198929-112205782 (-)

Description Similar to VIII-2: Myosin-2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g54280`	Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation.	No verified direct reference in this release
`At4g27370`	Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation.	No verified direct reference in this release
`At3g19960`	Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation.	No verified direct reference in this release
`At1g50360`	Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation.	No verified direct reference in this release
`At2g20290`	Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030975 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006897 endocytosis Biological Process

GO:0007015 actin filament organization Biological Process

GO:0010082 regulation of root meristem growth Biological Process

GO:0030048 actin filament-based movement Biological Process

GO:0048767 root hair elongation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005768 endosome Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009504 cell plate Cellular Component

KEGG gene cross-reference

ath:AT1G50360

ath:AT2G20290

ath:AT3G19960

ath:AT4G27370

ath:AT5G54280

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.598

Rank 1 · TkA07G442780 · TK1151

Nucleus0.236

Rank 2 · TkA07G442780 · TK1151

Cell membrane0.192

Rank 3 · TkA07G442780 · TK1151

Golgi apparatus0.055

Rank 4 · TkA07G442780 · TK1151

Plastid0.044

Rank 5 · TkA07G442780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02736Myosin_N133-180 aa

PF25369SH3_VIII-1_N135-179 aa

PF00063Myosin_head187-820 aa

PF24883NPHP3_N257-296 aa

PF00270DEAD261-290 aa

PF06414Zeta_toxin263-294 aa

PF00270DEAD407-465 aa

PF23153Aip3p_Bud6_N416-446 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G442780	`PF02736`	Myosin_N	133	180	0.00072	19.9
TkA07G442780	`PF25369`	SH3_VIII-1_N	135	179	3.5e-15	55.8
TkA07G442780	`PF00063`	Myosin_head	187	820	1.4e-201	672.0
TkA07G442780	`PF24883`	NPHP3_N	257	296	0.12	13.2
TkA07G442780	`PF00270`	DEAD	261	290	0.074	13.5
TkA07G442780	`PF06414`	Zeta_toxin	263	294	0.0085	16.3
TkA07G442780	`PF00270`	DEAD	407	465	0.074	13.5
TkA07G442780	`PF23153`	Aip3p_Bud6_N	416	446	0.85	10.6
TkA07G442780	`PF24883`	NPHP3_N	678	743	0.12	13.2
TkA07G442780	`PF23153`	Aip3p_Bud6_N	680	721	0.85	10.6
TkA07G442780	`PF23858`	DUF7220	858	877	0.08	14.0
TkA07G442780	`PF00612`	IQ	860	876	7.7e-09	35.3
TkA07G442780	`PF23858`	DUF7220	895	918	0.08	14.0
TkA07G442780	`PF00612`	IQ	898	915	7.7e-09	35.3
TkA07G442780	`PF05557`	MAD	916	1006	0.0047	16.1
TkA07G442780	`PF27954`	CCDC192	934	1017	1.1	9.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4K0A6`	Arabidopsis thaliana	sp\|F4K0A6\|MYO2_ARATH Myosin-2	49.500%	Swiss-Prot	Medium
`F4JIU4`	Arabidopsis thaliana	sp\|F4JIU4\|MYO4_ARATH Myosin-4	46.400%	Swiss-Prot	Medium
`Q9LHE9`	Arabidopsis thaliana	sp\|Q9LHE9\|MYO1_ARATH Myosin-1	47.500%	Swiss-Prot	Medium
`F4I507`	Arabidopsis thaliana	sp\|F4I507\|MYO3_ARATH Myosin-3	46.000%	Swiss-Prot	Medium
`F4IUG9`	Arabidopsis thaliana	sp\|F4IUG9\|MYO13_ARATH Myosin-13	37.400%	Swiss-Prot	Medium

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