TkA07G442690 | RubberDandelionOmics

Gene overview

TkA07G442690

Reference: TK1151 Chr: Chr07 Coordinates: 112168223-112171488 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1294 bp · TkA07G442690|TK1151|cDNA

TTTCTAATTATCATATACATTTCACTTTCGATTCCAATTGTTAGTGTTTGGAGTGACGCCATCACTTCAGCTATTCCATTGGAAGACGGAAACACCATAGTTTCTTCTACTGGAATCTTCGAATTAGGATTCTTCAGTCCCGGGATTTCAATGAACAGGTACATCGGAATATGGTACAAAAGTATCCCATCGAAAACCGTTGTTTGGGTCGCTAACAGAAATACCCCTGTTCCTAACACATCCGGCGTTTTAAAATTAAC...

CDS

Download CDS FASTA

1095 bp · TkA07G442690|TK1151|CDS

ATGAAAAATTCAGTGCCAAAGAGTGAAGACGAACAGAAGGGAAACGACACTGACCAATTTTACACAAATGAAAGCCACAATGACGATCTTGAGTTGCCCTTGTTTAATTTATCAGAAATTGTTAAAGCTACGCATAACTTTTCATTTAATAATAAGCTTGGAGAAGGGGGCTATGGACCTGTTTACAAGGGAATTCTTCCGGATGGAAAAGAAGTGGCGGTGAAGCGACTCTCAAAGACATCAAATCAAGGGCTTGATGA...

Protein

Download Protein FASTA

364 aa · TkA07G442690|TK1151|PROTEIN

MKNSVPKSEDEQKGNDTDQFYTNESHNDDLELPLFNLSEIVKATHNFSFNNKLGEGGYGPVYKGILPDGKEVAVKRLSKTSNQGLDEFKNEVICISKLQHRNLVKLLGCCIQGNEKMLIYEYMPNKSLDYFIFDESRRKLLDWPERFNIINGIARGLQYLHQDSRLRIIHRDLKASNILLDFNMNPKISDFGMARSFIGNETQANTMKVVGTYGYMSPEYAVDGLFSVKSDVFSFGVLVLEIVTGKKNRGFFHHDHHHNL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G442690`
TK1151 ID	TkA07G442690
OH-1004 ID	LXL04_037555
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	68.700
Protein coverage (%)	TK1151 95.604 / OH-1004 35.766 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G442690

Location Chr07:112168223-112171488 (+)

Description Similar to At4g27290: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g27300`	G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1.	No verified direct reference in this release
`At4g27290`	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290.	No verified direct reference in this release
`At4g21390`	G-type lectin S-receptor-like serine/threonine-protein kinase B120.	No verified direct reference in this release
`At4g21380`	Involved in the regulation of cellular expansion and differentiation.	No verified direct reference in this release
`At1g65790`	Involved in the regulation of cellular expansion and differentiation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037555 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0006955 immune response Biological Process

GO:0007165 signal transduction Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0048544 recognition of pollen Biological Process

GO:0071215 cellular response to abscisic acid stimulus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G65790

ath:AT1G65800

ath:AT4G21380

ath:AT4G27290

ath:AT4G27300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.525

Rank 1 · TkA07G442690 · TK1151

Cytoplasm0.399

Rank 2 · TkA07G442690 · TK1151

Nucleus0.241

Rank 3 · TkA07G442690 · TK1151

Golgi apparatus0.039

Rank 4 · TkA07G442690 · TK1151

Endoplasmic reticulum0.038

Rank 5 · TkA07G442690 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714PK_Tyr_Ser-Thr48-316 aa

PF00069Pkinase48-315 aa

PF03109ABC159-77 aa

PF12330Haspin_kinase137-196 aa

PF01636APH146-195 aa

PF03109ABC1147-205 aa

PF03109ABC1249-259 aa

PF11883DUF3403300-311 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G442690	`PF07714`	PK_Tyr_Ser-Thr	48	316	1.7e-50	172.5
TkA07G442690	`PF00069`	Pkinase	48	315	8.8e-47	160.4
TkA07G442690	`PF03109`	ABC1	59	77	0.00015	21.7
TkA07G442690	`PF12330`	Haspin_kinase	137	196	0.11	12.3
TkA07G442690	`PF01636`	APH	146	195	0.02	15.4
TkA07G442690	`PF03109`	ABC1	147	205	0.00015	21.7
TkA07G442690	`PF03109`	ABC1	249	259	0.00015	21.7
TkA07G442690	`PF11883`	DUF3403	300	311	1.9e-07	31.8
TkA07G442690	`PF11883`	DUF3403	319	364	1.9e-07	31.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O81833`	Arabidopsis thaliana	sp\|O81833\|SD11_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1	64.200%	Swiss-Prot	High
`O81832`	Arabidopsis thaliana	sp\|O81832\|Y4729_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	64.800%	Swiss-Prot	High
`O81906`	Arabidopsis thaliana	sp\|O81906\|B120_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase B120	63.700%	Swiss-Prot	High
`O81905`	Arabidopsis thaliana	sp\|O81905\|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8	62.600%	Swiss-Prot	High
`Q39086`	Arabidopsis thaliana	sp\|Q39086\|SD17_ARATH Receptor-like serine/threonine-protein kinase SD1-7	59.200%	Swiss-Prot	High

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