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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G441370
Reference: TK1151 Chr: Chr07 Coordinates: 111791251-111797038 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3029 bp · TkA07G441370|TK1151|cDNA

TTTGGTTTAAAGCAAAAACCACCCACCAAAAATGCGTATGGTCAAATGTCCGCCAAGGCCAGAACCCTCACCAAGCTGGTAAGTTCCGCCACCACGTACTCCGTTCGCACGGCCAATAACCTCGCCCGTTCCGCCGTCACTATCACCTCGCCTCTCAGCTCCGCCGCAGCACAGGACGTAACCTTGAAGAACTATATACAACTTACCAACGCCGCAAAATATTCTTCTTCATCATCACGTCTTAAACCCCCAAAATCAAA...

CDS

Download CDS FASTA

2637 bp · TkA07G441370|TK1151|CDS

ATGTCCGCCAAGGCCAGAACCCTCACCAAGCTGGTAAGTTCCGCCACCACGTACTCCGTTCGCACGGCCAATAACCTCGCCCGTTCCGCCGTCACTATCACCTCGCCTCTCAGCTCCGCCGCAGCACAGGACGTAACCTTGAAGAACTATATACAACTTACCAACGCCGCAAAATATTCTTCTTCATCATCACGTCTTAAACCCCCAAAATCAAAAAAATCTTCATCTTCCTCAAAATCAAAGAGATCTTCATTTTCCAA...

Protein

Download Protein FASTA

878 aa · TkA07G441370|TK1151|PROTEIN

MSAKARTLTKLVSSATTYSVRTANNLARSAVTITSPLSSAAAQDVTLKNYIQLTNAAKYSSSSSRLKPPKSKKSSSSSKSKRSSFSKPLSELAIESIRINTSASLSDTKRALSRELSSILCDAEETETETETDDVEEPLVTLLEIPWLPPVSNTTTSQRRRELFRVKKAKWVFKSTQGNRFSKLTRMCTHNLGAKVAIEVFGKLGRETGPKEYNAMIDICIEKARNTDDEDVALEEFHRAYRVFECMREFGFEIKEQTYG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G441370
TK1151 IDTkA07G441370
OH-1004 IDLXL04_030958
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 98.519 / OH-1004 98.519
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G441370
LocationChr07:111791251-111797038 (+)
DescriptionSimilar to At4g04790: Pentatricopeptide repeat-containing protein At4g04790, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g04790 Pentatricopeptide repeat-containing protein At4g04790, mitochondrial. No verified direct reference in this release
At4g21880 Pentatricopeptide repeat-containing protein At4g21880, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030958 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0004016 adenylate cyclase activity Molecular Function
KEGG gene cross-reference
ath:AT1G62590
ath:AT4G04790
ath:AT4G21880
ath:AT5G65560
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.739
Rank 1 · TkA07G441370 · TK1151
Plastid0.183
Rank 2 · TkA07G441370 · TK1151
Nucleus0.074
Rank 3 · TkA07G441370 · TK1151
Cytoplasm0.051
Rank 4 · TkA07G441370 · TK1151
Cell membrane0.015
Rank 5 · TkA07G441370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25058ARM_TT2153-86 aa
PF29070MSC6_N75-115 aa
PF17177PPR_long183-278 aa
PF13041PPR_2213-223 aa
PF01535PPR213-220 aa
PF13428TPR_14228-244 aa
PF23276TPR_24235-267 aa
PF13041PPR_2236-259 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G441370PF25058ARM_TT2153863.68.3
TkA07G441370PF29070MSC6_N751158.9e-0935.6
TkA07G441370PF17177PPR_long1832782.4e-1763.7
TkA07G441370PF13041PPR_22132233.5e-2795.0
TkA07G441370PF01535PPR2132202.9e-1762.3
TkA07G441370PF13428TPR_142282440.0003121.9
TkA07G441370PF23276TPR_242352671e-1661.8
TkA07G441370PF13041PPR_22362593.5e-2795.0
TkA07G441370PF01535PPR2372522.9e-1762.3
TkA07G441370PF13812PPR_32382517.1e-1968.4
TkA07G441370PF12854PPR_12382488.8e-1245.3
TkA07G441370PF12921ATP134184450.0003421.2
TkA07G441370PF23276TPR_244235231e-1661.8
TkA07G441370PF13041PPR_24294753.5e-2795.0
TkA07G441370PF13812PPR_34304747.1e-1968.4
TkA07G441370PF17177PPR_long4325692.4e-1763.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q6NQ81Arabidopsis thalianasp|Q6NQ81|PP304_ARATH Pentatricopeptide repeat-containing protein At4g04790, mitochondrial44.100%Swiss-ProtMedium
O49711Arabidopsis thalianasp|O49711|PP335_ARATH Pentatricopeptide repeat-containing protein At4g21880, mitochondrial41.700%Swiss-ProtMedium

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