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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G437350
Reference: TK1151 Chr: Chr07 Coordinates: 110726220-110729753 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1353 bp · TkA07G437350|TK1151|cDNA

TAAATATCCAGCCCATAACTATCTCTTTTACAAATGGCGGATACCACTAGATGCAAAACTACATCTATCCTTCAACTTCAATCCATACTCTTCCATTTTTGTCCCCACCATATCCCTATTCCCCACCCGTTCTCACTTCTCACCTCGCCATGCCAATCTTCTTCCTCTAATTCTCAATCCAACTCTCTCTACAACTTTCTTTCAATTCTCCATTGATTACTATGGCTGTCGCCATGGCGTCTTGCGGGTCTACTCTCGGA...

CDS

Download CDS FASTA

867 bp · TkA07G437350|TK1151|CDS

ATGGCTGTCGCCATGGCGTCTTGCGGGTCTACTCTCGGAGTTTACACGAAATTAGTAGCATTAGAGAAGCAACCTATCTCTAAAGCTGCGTTTCTCGGGTGTAATTTGGGTTCAGATTCCCTTAAACATCTATGCAGTTCAGCTAAACCAAGATTGTCGTATTCATTGAGTACTATGATTCCAAAAGCATCAGCTACAGCCATTGAGGATGGAAGTTATCAAGAAACCGATGTGGTTCCAACACCTAAAGTGATAATCGA...

Protein

Download Protein FASTA

288 aa · TkA07G437350|TK1151|PROTEIN

MAVAMASCGSTLGVYTKLVALEKQPISKAAFLGCNLGSDSLKHLCSSAKPRLSYSLSTMIPKASATAIEDGSYQETDVVPTPKVIIDQDSDPDATVVEITFGNRLGALLDTMNALKNLGLNVVKAKVHLDSSGKHNTFSITKSSTGRKVDDPELLEAIRLTIISNLLEYHPESSAQLAMGEAFGVEAPKQKLDVDIATRIRISDDGPDRSLLLVETADRPGLLVDLVKIVTDINVAVESGEFDTEGLLAKAKFHVNYKNK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G437350
TK1151 IDTkA07G437350
OH-1004 IDLXL04_030857
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G437350
LocationChr07:110726220-110729753 (+)
DescriptionSimilar to ACR11: ACT domain-containing protein ACR11
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g16880 May be involved in feedback regulation of amino acid metabolism.
The ACR11 encodes a novel type of chloroplastic ACT domain repeat protein that is coordinately expressed with GLN2 in Arabidopsis.2011 · DOI: 10.1186/1471-2229-11-118
At5g04740 May be involved in feedback regulation of amino acid metabolism.
The ACR11 encodes a novel type of chloroplastic ACT domain repeat protein that is coordinately expressed with GLN2 in Arabidopsis.2011 · DOI: 10.1186/1471-2229-11-118

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: P83643 ACT domain-containing protein DS12, chloroplastic. No verified direct reference in this release
Os08g0242700 ACT domain-containing protein DS12, chloroplastic. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030857 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009409 response to cold Biological Process
GO:0009416 response to light stimulus Biological Process
GO:0009744 response to sucrose Biological Process
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0010319 stromule Cellular Component
GO:0016597 amino acid binding Molecular Function
KEGG gene cross-reference
ath:AT1G16880
ath:AT3G01990
ath:AT5G04740
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.966
Rank 1 · TkA07G437350 · TK1151
Nucleus0.032
Rank 2 · TkA07G437350 · TK1151
Mitochondrion0.028
Rank 3 · TkA07G437350 · TK1151
Cytoplasm0.022
Rank 4 · TkA07G437350 · TK1151
Cell membrane0.018
Rank 5 · TkA07G437350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24931ACT_ACR9_3rd84-164 aa
PF22120T6SS_Tse3_N86-115 aa
PF24914ACR10_N89-141 aa
PF26956ACT_ACR_D190-164 aa
PF22754bHLH-TF_ACT-like_plant95-135 aa
PF01842ACT96-157 aa
PF13291ACT_497-136 aa
PF12229PG_binding_4134-161 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G437350PF24931ACT_ACR9_3rd841644.8e-1040.1
TkA07G437350PF22120T6SS_Tse3_N861150.2212.6
TkA07G437350PF24914ACR10_N891410.007416.4
TkA07G437350PF26956ACT_ACR_D1901641e-1145.2
TkA07G437350PF22754bHLH-TF_ACT-like_plant951355.4e-0523.9
TkA07G437350PF01842ACT961570.006616.9
TkA07G437350PF13291ACT_4971364.8e-0627.8
TkA07G437350PF12229PG_binding_41341610.01116.6
TkA07G437350PF24931ACT_ACR9_3rd2072454.8e-1040.1
TkA07G437350PF24914ACR10_N2082600.007416.4
TkA07G437350PF26956ACT_ACR_D12102581e-1145.2
TkA07G437350PF01842ACT2112320.006616.9
TkA07G437350PF13291ACT_42132614.8e-0627.8
TkA07G437350PF12229PG_binding_42172410.01116.6
TkA07G437350PF22754bHLH-TF_ACT-like_plant2182375.4e-0523.9
TkA07G437350PF22120T6SS_Tse3_N2182350.2212.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FZ47Arabidopsis thalianasp|Q9FZ47|ACR11_ARATH ACT domain-containing protein ACR1176.900%Swiss-ProtHigh
Q9LZ23Arabidopsis thalianasp|Q9LZ23|ACR12_ARATH ACT domain-containing protein ACR1261.100%Swiss-ProtHigh
P83643Oryza sativa subsp. indicasp|P83643|UP12_ORYSI ACT domain-containing protein DS12, chloroplastic74.300%Swiss-ProtHigh
Q0J709Oryza sativa subsp. japonicasp|Q0J709|UP12_ORYSJ ACT domain-containing protein DS12, chloroplastic74.300%Swiss-ProtHigh

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