TkA07G432240 | RubberDandelionOmics

Gene overview

TkA07G432240

Reference: TK1151 Chr: Chr07 Coordinates: 109371425-109373253 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

858 bp · TkA07G432240|TK1151|cDNA

GGCTCATAGCAAGCAAACCCCCCGCGTTGTTTTGGTAACAAAAACACAAACACAAACCCTAGATACTCCGTTAGACCATTAGCTGGTGTGACCTCCGCAAACGCCTCCCGATTCTGTAGCAGTCGCACCGGCGAAACGAGCAGCAGCCATGGTGAAGTATTCCAAGGAGCCAGAAAACCCTACCAAGTCCTGCAAAGCAAGAGGATCGGATCTCAGGTGTCATTTCAAGAACACAAGAGAAACCGCACATGCTCTTCGCA...

CDS

Download CDS FASTA

528 bp · TkA07G432240|TK1151|CDS

ATGGTGAAGTATTCCAAGGAGCCAGAAAACCCTACCAAGTCCTGCAAAGCAAGAGGATCGGATCTCAGGTGTCATTTCAAGAACACAAGAGAAACCGCACATGCTCTTCGCAAGATGTCTTTAATCAAGGCTAAAAGTTACCTGGAAGATGTTCTTGTTCACAAACAAGCCATTCCGTTCACTCGTTTTTGTCGTGGAGTTGGACGAACTGCACAAGCAAAAAACCGTCATTCAAATGGGCAAGGACGTTGGCCTGCTAA...

Protein

Download Protein FASTA

175 aa · TkA07G432240|TK1151|PROTEIN

MVKYSKEPENPTKSCKARGSDLRCHFKNTRETAHALRKMSLIKAKSYLEDVLVHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPESQLAPRKTKNQA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G432240`
TK1151 ID	TkA07G432240
OH-1004 ID	LXL04_030800
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G432240

Location Chr07:109371425-109373253 (-)

Description Similar to RPL17B: 60S ribosomal protein L17-2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g67430`	Large ribosomal subunit protein uL22y.	No verified direct reference in this release
`At1g27400`	Large ribosomal subunit protein uL22z.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030800 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002181 cytoplasmic translation Biological Process

GO:0061484 hematopoietic stem cell homeostasis Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005773 vacuole Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0022625 cytosolic large ribosomal subunit Cellular Component

GO:0022626 cytosolic ribosome Cellular Component

KEGG gene cross-reference

ath:AT1G27400

ath:AT1G67430

zma:541667

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.751

Rank 1 · TkA07G432240 · TK1151

Nucleus0.156

Rank 2 · TkA07G432240 · TK1151

Plastid0.128

Rank 3 · TkA07G432240 · TK1151

Mitochondrion0.080

Rank 4 · TkA07G432240 · TK1151

Endoplasmic reticulum0.057

Rank 5 · TkA07G432240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00237Ribosomal_L2217-151 aa

PF14669Asp_Glu_race_227-78 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G432240	`PF00237`	Ribosomal_L22	17	151	5e-32	110.9
TkA07G432240	`PF14669`	Asp_Glu_race_2	27	78	0.12	12.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P51413`	Arabidopsis thaliana	sp\|P51413\|RL172_ARATH Large ribosomal subunit protein uL22y	86.900%	Swiss-Prot	High
`Q93VI3`	Arabidopsis thaliana	sp\|Q93VI3\|RL171_ARATH Large ribosomal subunit protein uL22z	88.600%	Swiss-Prot	High

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