TkA07G429130 | RubberDandelionOmics

Gene overview

TkA07G429130

Reference: TK1151 Chr: Chr07 Coordinates: 108585915-108591191 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2805 bp · TkA07G429130|TK1151|cDNA

TTTATTCACTCCCCTTTGCTTTACTGACAGGCTAAGAAAGCAAAAGTTCACTGACAACTTGTACCATTACTTTATAACCTCACATGTTCTTGTAATTTATCTTTCTAAACTTAGTTTTTTACACAAGTTTCCCTTTATTTCCATTCCATTTGTTTATTCCTTTAAATGGTTCCATTTTTAACTTTCCATTTTTTGATTGAATGGAACGGACCTACTGAATGCTTATCCAAAGCTACAAAAAATAGCTTTAATTTTTCAAA...

CDS

Download CDS FASTA

2103 bp · TkA07G429130|TK1151|CDS

ATGTTGAAATTGGGTAAGAAAGAGCAACAGCGGCGGGTGTTCAGTTCATCTGATGACAGTGCAATCACGAAGCAAGTTTTAGCGACGCATTCGCCTGATGGTCGCGAAGTTGACTTGGAAGTACTTCTTGGTGCTATTGAAGAAACGTTTCATCATTCGGTTCCCGGGGAAATTGATACAGTCATCAACGGGGATATACATGCGTTTCAAGGGGAGGAGAAGCATGCTTTATTAGGGTTTGACGATATTAATGGGATCCC...

Protein

Download Protein FASTA

700 aa · TkA07G429130|TK1151|PROTEIN

MLKLGKKEQQRRVFSSSDDSAITKQVLATHSPDGREVDLEVLLGAIEETFHHSVPGEIDTVINGDIHAFQGEEKHALLGFDDINGIPDGLADIIHKISCELNCKCSGGSDAHASTLAILNMLSSYSWEAKVVISLGAFAINFGEFWLVAQLFATNPLAKSIALIKHMPNVIEHYKSLKTRFDAINLLIKAMLDVTKCIITFKNLPRQYIQDDMPPKSTATAHIPTATYWSIKSMVACTSQLTSLLGMNYDRFITATSEAW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G429130`
TK1151 ID	TkA07G429130
OH-1004 ID	LXL04_030760
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	90.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G429130

Location Chr07:108585915-108591191 (+)

Description Similar to SEOA: Protein SIEVE ELEMENT OCCLUSION A

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g01680`	Scaffold protein required to form the phloem filament matrix in sieve elements.	Arabidopsis P-protein filament formation requires both AtSEOR1 and AtSEOR2.2012 · DOI: 10.1093/pcp/pcs046
`At3g01670`	Scaffold protein required to form the phloem filament matrix in sieve elements.	Arabidopsis P-protein filament formation requires both AtSEOR1 and AtSEOR2.2012 · DOI: 10.1093/pcp/pcs046
`At1g67790`	Protein SIEVE ELEMENT OCCLUSION C.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_030760 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0010088 phloem development Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0097218 sieve plate Cellular Component

GO:0042803 protein homodimerization activity Molecular Function

KEGG gene cross-reference

ath:AT1G67790

ath:AT3G01670

ath:AT3G01680

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.462

Rank 1 · TkA07G429130 · TK1151

Cell membrane0.421

Rank 2 · TkA07G429130 · TK1151

Nucleus0.202

Rank 3 · TkA07G429130 · TK1151

Endoplasmic reticulum0.067

Rank 4 · TkA07G429130 · TK1151

Lysosome / Vacuole0.063

Rank 5 · TkA07G429130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14576SEO_N17-307 aa

PF00644PARP290-335 aa

PF00644PARP370-409 aa

PF14577SEO_C468-699 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G429130	`PF14576`	SEO_N	17	307	6.8e-109	364.2
TkA07G429130	`PF00644`	PARP	290	335	0.76	10.0
TkA07G429130	`PF00644`	PARP	370	409	0.76	10.0
TkA07G429130	`PF14577`	SEO_C	468	699	2.4e-98	328.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SS87`	Arabidopsis thaliana	sp\|Q9SS87\|SEOB_ARATH Protein SIEVE ELEMENT OCCLUSION B	38.800%	Swiss-Prot	Medium
`Q93XX2`	Arabidopsis thaliana	sp\|Q93XX2\|SEOA_ARATH Protein SIEVE ELEMENT OCCLUSION A	36.000%	Swiss-Prot	Medium
`Q9FXE2`	Arabidopsis thaliana	sp\|Q9FXE2\|SEOC_ARATH Protein SIEVE ELEMENT OCCLUSION C	28.500%	Swiss-Prot	Low

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