Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1143 bp · TkA07G428950|TK1151|cDNA
ATGAAATTGGCGCCAACTATGGAGAACCTTCCGGATGAAACTTTCTCTGATATATTCACCCGGGTATTGGCAAAACAACTTGCTCAAATGAGATGCGTTTGTAAATCTTGGAATGCTTTGTTATCTGAATCCTCATTTATAAAATCCCACCTCCAACGTTCTATCCATAACAACAATGGGATTTTCTTGTTACTATACCGCGACTATTTTTTTGACTATAGACAAGTCACAAAATGCTTCACCGGTTCTCCCAATCTTGA...
1143 bp · TkA07G428950|TK1151|CDS
ATGAAATTGGCGCCAACTATGGAGAACCTTCCGGATGAAACTTTCTCTGATATATTCACCCGGGTATTGGCAAAACAACTTGCTCAAATGAGATGCGTTTGTAAATCTTGGAATGCTTTGTTATCTGAATCCTCATTTATAAAATCCCACCTCCAACGTTCTATCCATAACAACAATGGGATTTTCTTGTTACTATACCGCGACTATTTTTTTGACTATAGACAAGTCACAAAATGCTTCACCGGTTCTCCCAATCTTGA...
Protein
Download Protein FASTA380 aa · TkA07G428950|TK1151|PROTEIN
MKLAPTMENLPDETFSDIFTRVLAKQLAQMRCVCKSWNALLSESSFIKSHLQRSIHNNNGIFLLLYRDYFFDYRQVTKCFTGSPNLEPELSNFINFLVNPQHHVIGSVDGLICFCRGKFPCPSCNYDICISNPSLSAMLTLPPCSFPSDCLGYHPWFAFDPKTNDYKVFILTSFLNGYNLVLQAEVYSMKKGSWKSISQTIPSHVIRRRGHIHNFVINENHGHIHWFCDTHIDTDMKLKRQTIVSFDLSEETFSEIPSPD...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA07G428950 |
|---|---|
| TK1151 ID | TkA07G428950 |
| OH-1004 ID | LXL04_030756 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 73.800 |
| Protein coverage (%) | TK1151 60.263 / OH-1004 73.377Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA07G428950 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr07:108525157-108526299 (-) | |||||||||
| Description | Similar to At3g06240: F-box/kelch-repeat protein At3g06240 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0008284 positive regulation of cell population proliferation Biological Process GO:0009626 plant-type hypersensitive response Biological Process GO:0016567 protein ubiquitination Biological Process GO:0031348 negative regulation of defense response Biological Process GO:0042177 negative regulation of protein catabolic process Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0009506 plasmodesma Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT3G06240 ath:AT3G07870 ath:AT3G16210 ath:AT4G12560 ath:AT4G22390 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF12937F-box-like8-46 aaPF00646F-box8-46 aaPF08268FBA_3102-355 aaPF07734FBA_1108-310 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA07G428950 | PF12937 | F-box-like | 8 | 46 | 2.2e-07 | 31.2 |
| TkA07G428950 | PF00646 | F-box | 8 | 46 | 1.5e-06 | 28.5 |
| TkA07G428950 | PF08268 | FBA_3 | 102 | 355 | 1.1e-21 | 77.9 |
| TkA07G428950 | PF07734 | FBA_1 | 108 | 310 | 1.8e-11 | 44.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.