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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G424060
Reference: TK1151 Chr: Chr07 Coordinates: 107267134-107269200 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1971 bp · TkA07G424060|TK1151|cDNA

ATGCTTACACGATTTGATCACAACAGTCGCCGGATTCTCAAGTTTCCGGCGGTTCTTCCGTCTCAAGATGTCAATCCAATCACACTTCTTCGCTCTTTGATCACTCTCTCAAACTCCATCACCAGTTACCAGTCTGAATTCTTCGCTACTCAACGACGAAACGGTCGGGAATCGATACGACAGATTGGGATTCTGTGTTTGTTCTTCGGTGAGCTTGTTGAGCAAGACGTTTCTGGTTTGGCCGATTCTGCTGTGCTCTG...

CDS

Download CDS FASTA

1971 bp · TkA07G424060|TK1151|CDS

ATGCTTACACGATTTGATCACAACAGTCGCCGGATTCTCAAGTTTCCGGCGGTTCTTCCGTCTCAAGATGTCAATCCAATCACACTTCTTCGCTCTTTGATCACTCTCTCAAACTCCATCACCAGTTACCAGTCTGAATTCTTCGCTACTCAACGACGAAACGGTCGGGAATCGATACGACAGATTGGGATTCTGTGTTTGTTCTTCGGTGAGCTTGTTGAGCAAGACGTTTCTGGTTTGGCCGATTCTGCTGTGCTCTG...

Protein

Download Protein FASTA

656 aa · TkA07G424060|TK1151|PROTEIN

MLTRFDHNSRRILKFPAVLPSQDVNPITLLRSLITLSNSITSYQSEFFATQRRNGRESIRQIGILCLFFGELVEQDVSGLADSAVLCFSELHHSFQKIRFLFEDCTRGGARVFLLMKSHFVATQFLTLIRAVGTALDILPLNSIKVSREVKELVEMVAKQARKARMEVDPEDDYAMKRVMLILNQFENRFEPDPIMIKRVLHYLGINSWSECHREIRGVLFENSVLENFDDQTAGKGNLEILSCLNPEDFRCPISLELMT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G424060
TK1151 IDTkA07G424060
OH-1004 IDLXL04_030700
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)95.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G424060
LocationChr07:107267134-107269200 (+)
DescriptionSimilar to PUB19: U-box domain-containing protein 19
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g60190 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At1g10560 Functions as an E3 ubiquitin ligase (By similarity).
The N-Terminal UND Motif of the Arabidopsis U-Box E3 Ligase PUB18 Is Critical for the Negative Regulation of ABA-Mediated Stomatal Movement and Determines Its Ubiquitination Specificity for Exocyst Subunit Exo70B1.2016 · DOI: 10.1105/tpc.16.00347
At1g29340 Functions as an E3 ubiquitin ligase.
The E3 ubiquitin ligase activity of arabidopsis PLANT U-BOX17 and its functional tobacco homolog ACRE276 are required for cell death and defense.2006 · DOI: 10.1105/tpc.105.039198
At5g01830 Functions as an E3 ubiquitin ligase. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030700 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002237 response to molecule of bacterial origin Biological Process
GO:0009609 response to symbiotic bacterium Biological Process
GO:0009610 response to symbiotic fungus Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009787 regulation of abscisic acid-activated signaling pathway Biological Process
GO:0009877 nodulation Biological Process
GO:0010029 regulation of seed germination Biological Process
GO:0010119 regulation of stomatal movement Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0036377 arbuscular mycorrhizal association Biological Process
GO:0098542 defense response to other organism Biological Process
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT1G10560
ath:AT1G29340
ath:AT1G60190
dosa:Os06g0102700
mtr:11430446
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.549
Rank 1 · TkA07G424060 · TK1151
Nucleus0.394
Rank 2 · TkA07G424060 · TK1151
Cell membrane0.156
Rank 3 · TkA07G424060 · TK1151
Endoplasmic reticulum0.053
Rank 4 · TkA07G424060 · TK1151
Lysosome / Vacuole0.043
Rank 5 · TkA07G424060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04564U-box10-22 aa
PF25368PUB10_N59-164 aa
PF24140TPR_TNPO3_IPO13_3rd181-204 aa
PF04564U-box247-315 aa
PF11789zf-Nse249-291 aa
PF13445zf-RING_UBOX252-288 aa
PF15227zf-C3HC4_4252-282 aa
PF14394DUF4423292-371 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G424060PF04564U-box10226.1e-1968.7
TkA07G424060PF25368PUB10_N591649.6e-1039.9
TkA07G424060PF24140TPR_TNPO3_IPO13_3rd1812040.05914.3
TkA07G424060PF04564U-box2473156.1e-1968.7
TkA07G424060PF11789zf-Nse2492910.0008319.8
TkA07G424060PF13445zf-RING_UBOX2522880.001719.0
TkA07G424060PF15227zf-C3HC4_42522820.2312.3
TkA07G424060PF14394DUF44232923710.01316.0
TkA07G424060PF06371Drf_GBD3384420.1712.1
TkA07G424060PF13513HEAT_EZ3483680.04515.0
TkA07G424060PF24768ARM_ARMC53524922.4e-0834.5
TkA07G424060PF25598ARM_PUB3555885.9e-1969.3
TkA07G424060PF24436INTS7_N3615490.02714.3
TkA07G424060PF00514Arm3814164.1e-1349.6
TkA07G424060PF21050ARMC9_ARM3864620.009916.6
TkA07G424060PF13513HEAT_EZ3904100.04515.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O80742Arabidopsis thalianasp|O80742|PUB19_ARATH U-box domain-containing protein 1939.400%Swiss-ProtMedium
Q9XIJ5Arabidopsis thalianasp|Q9XIJ5|PUB18_ARATH U-box domain-containing protein 1838.000%Swiss-ProtMedium
Q9C7R6Arabidopsis thalianasp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 1728.300%Swiss-ProtLow
Q9LZW3Arabidopsis thalianasp|Q9LZW3|PUB16_ARATH U-box domain-containing protein 1627.900%Swiss-ProtLow

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