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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G423780
Reference: TK1151 Chr: Chr07 Coordinates: 107187854-107189164 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

672 bp · TkA07G423780|TK1151|cDNA

ATGCTTTTGGTTGGTGGGTGCCATTCTTTAGCAGCTCCAGACGATTACACATTTACGTTTACAATTACAGCTTGTTCACGCCATCGGACACTGATGGGTTTCGCGCAAAACTGTCATACGATGGTAATTAAACTTGGGTATAATTCAGATGTTTGTGTAGGCAACGCTTTAGTAAACATGTACGTTGTGTATTCAAGAACGGATTCCGCGCAGAAAGTGTTCGATGAAATGCCGCAACGAGATACAATCACCTGGACGAG...

CDS

Download CDS FASTA

672 bp · TkA07G423780|TK1151|CDS

ATGCTTTTGGTTGGTGGGTGCCATTCTTTAGCAGCTCCAGACGATTACACATTTACGTTTACAATTACAGCTTGTTCACGCCATCGGACACTGATGGGTTTCGCGCAAAACTGTCATACGATGGTAATTAAACTTGGGTATAATTCAGATGTTTGTGTAGGCAACGCTTTAGTAAACATGTACGTTGTGTATTCAAGAACGGATTCCGCGCAGAAAGTGTTCGATGAAATGCCGCAACGAGATACAATCACCTGGACGAG...

Protein

Download Protein FASTA

223 aa · TkA07G423780|TK1151|PROTEIN

MLLVGGCHSLAAPDDYTFTFTITACSRHRTLMGFAQNCHTMVIKLGYNSDVCVGNALVNMYVVYSRTDSAQKVFDEMPQRDTITWTSLVKGYATGGKIHQAEELSALIDMYAKCGKIDAGQLEDAFKAVKEMEMEPDGVIYRALLSACRLHGNVGLAIRECRMDKEGDLSSIPGCSYIEIDGVVHEFIAGDKLHPRIKEINLKLNEVMRRISLETFVGDHSLC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G423780
TK1151 IDTkA07G423780
OH-1004 IDLXL04_030697
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)47.500
Protein coverage (%)TK1151 100.000 / OH-1004 61.150
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G423780
LocationChr07:107187854-107189164 (+)
DescriptionSimilar to PCMP-H61: Pentatricopeptide repeat-containing protein At5g66520
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g22690 Pentatricopeptide repeat-containing protein At3g22690. No verified direct reference in this release
At2g34400 Pentatricopeptide repeat-containing protein At2g34400. No verified direct reference in this release
At5g48910 Pentatricopeptide repeat-containing protein At5g48910. No verified direct reference in this release
At3g47530 Pentatricopeptide repeat-containing protein At3g47530. No verified direct reference in this release
At4g18750 Plays a major role in single RNA editing events in chloroplasts.
Identification of two pentatricopeptide repeat genes required for RNA editing and zinc binding by C-terminal cytidine deaminase-like domains.2013 · DOI: 10.1074/jbc.m113.485755

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030697 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0016554 cytidine to uridine editing Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G20540
ath:AT4G37380
ath:AT5G40405
ath:AT5G59200
ath:AT5G66520
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.578
Rank 1 · TkA07G423780 · TK1151
Plastid0.192
Rank 2 · TkA07G423780 · TK1151
Nucleus0.067
Rank 3 · TkA07G423780 · TK1151
Cytoplasm0.062
Rank 4 · TkA07G423780 · TK1151
Peroxisome0.017
Rank 5 · TkA07G423780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_212-26 aa
PF12854PPR_113-19 aa
PF13812PPR_314-28 aa
PF01535PPR17-28 aa
PF13812PPR_348-78 aa
PF13041PPR_250-80 aa
PF01535PPR55-80 aa
PF12854PPR_166-77 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G423780PF13041PPR_212261e-1145.4
TkA07G423780PF12854PPR_113196.2e-1142.6
TkA07G423780PF13812PPR_314282.4e-0525.0
TkA07G423780PF01535PPR17283.1e-1246.6
TkA07G423780PF13812PPR_348782.4e-0525.0
TkA07G423780PF13041PPR_250801e-1145.4
TkA07G423780PF01535PPR55803.1e-1246.6
TkA07G423780PF12854PPR_166776.2e-1142.6
TkA07G423780PF13041PPR_2801041e-1145.4
TkA07G423780PF12854PPR_1801046.2e-1142.6
TkA07G423780PF13812PPR_3801042.4e-0525.0
TkA07G423780PF01535PPR831043.1e-1246.6
TkA07G423780PF01535PPR1051183.1e-1246.6
TkA07G423780PF13812PPR_31061482.4e-0525.0
TkA07G423780PF02284COX5A1091600.04714.5
TkA07G423780PF13041PPR_21181481e-1145.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LUJ2Arabidopsis thalianasp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g2269033.600%Swiss-ProtMedium
O64705Arabidopsis thalianasp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g3440029.700%Swiss-ProtLow
Q9FI80Arabidopsis thalianasp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g4891026.000%Swiss-ProtLow
Q9SN85Arabidopsis thalianasp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g4753033.300%Swiss-ProtLow
Q9SN39Arabidopsis thalianasp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein DOT4, chloroplastic35.400%Swiss-ProtMedium

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