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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G415380
Reference: TK1151 Chr: Chr07 Coordinates: 104981079-104981979 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

672 bp · TkA07G415380|TK1151|cDNA

ATGCTGGCATCAGGAGAAACGCCAGACGAGTACACTTACTCGTATGCGATCAGTGCGTGTGCTCGTGGGAAACTGTTACGATTGGGAGAGAAGCTTCACGGCAAGGTTTTAGCAGGTGGGTTTTGTTCAAATCTGTTCGTCCAAACTAATTTAGTGAACCTCTATGCGGTGGCTGGAGAGGGAGACTCCAGTGGAGTGAAGAATGCACGTAAAGTGTTTGATGAAATGGGTGAGAGAAACATGAAATCGGTGATTTTAAA...

CDS

Download CDS FASTA

672 bp · TkA07G415380|TK1151|CDS

ATGCTGGCATCAGGAGAAACGCCAGACGAGTACACTTACTCGTATGCGATCAGTGCGTGTGCTCGTGGGAAACTGTTACGATTGGGAGAGAAGCTTCACGGCAAGGTTTTAGCAGGTGGGTTTTGTTCAAATCTGTTCGTCCAAACTAATTTAGTGAACCTCTATGCGGTGGCTGGAGAGGGAGACTCCAGTGGAGTGAAGAATGCACGTAAAGTGTTTGATGAAATGGGTGAGAGAAACATGAAATCGGTGATTTTAAA...

Protein

Download Protein FASTA

223 aa · TkA07G415380|TK1151|PROTEIN

MLASGETPDEYTYSYAISACARGKLLRLGEKLHGKVLAGGFCSNLFVQTNLVNLYAVAGEGDSSGVKNARKVFDEMGERNMKSVILKRGWIHSYITRSLHINNNKTNNNHTVRVNNALLHMYAGCGVINDAYKVFDKMPSRTTVSWTTMILGFAKQGHGEQALSVFQSMKDDHGSQPDDITMLAVLQACSHSGFVEKGRDIFRNMKDMWGIEPTNRALWLHHG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G415380
TK1151 IDTkA07G415380
OH-1004 IDLXL04_032628
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)31.400
Protein coverage (%)TK1151 95.964 / OH-1004 38.132
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G415380
LocationChr07:104981079-104981979 (+)
DescriptionSimilar to PCMP-H86: Putative pentatricopeptide repeat-containing protein At3g15130
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g13600 Pentatricopeptide repeat-containing protein At2g13600. No verified direct reference in this release
At4g14820 Pentatricopeptide repeat-containing protein At4g14820. No verified direct reference in this release
At3g02010 Putative pentatricopeptide repeat-containing protein At2g01510. No verified direct reference in this release
At3g53360 Pentatricopeptide repeat-containing protein At3g53360, mitochondrial. No verified direct reference in this release
At4g14050 Involved in C-to-U editing of mitochondrial RNA.
The DYW Subgroup PPR Protein MEF35 Targets RNA Editing Sites in the Mitochondrial rpl16, nad4 and cob mRNAs in Arabidopsis thaliana.2015 · DOI: 10.1371/journal.pone.0140680

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032628 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0010087 phloem or xylem histogenesis Biological Process
GO:0010305 leaf vascular tissue pattern formation Biological Process
GO:0010588 cotyledon vascular tissue pattern formation Biological Process
GO:0048366 leaf development Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G15130
ath:AT4G13650
ath:AT4G18750
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.740
Rank 1 · TkA07G415380 · TK1151
Plastid0.112
Rank 2 · TkA07G415380 · TK1151
Nucleus0.052
Rank 3 · TkA07G415380 · TK1151
Cytoplasm0.031
Rank 4 · TkA07G415380 · TK1151
Cell membrane0.007
Rank 5 · TkA07G415380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_21-22 aa
PF29070MSC6_N1-19 aa
PF12854PPR_16-19 aa
PF13812PPR_38-20 aa
PF17177PPR_long10-81 aa
PF01535PPR11-36 aa
PF12854PPR_140-44 aa
PF13812PPR_344-79 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G415380PF13041PPR_21224e-2588.4
TkA07G415380PF29070MSC6_N1190.0314.2
TkA07G415380PF12854PPR_16191.3e-1041.5
TkA07G415380PF13812PPR_38204.1e-0627.5
TkA07G415380PF17177PPR_long10810.0115.9
TkA07G415380PF01535PPR11361.1e-2073.0
TkA07G415380PF12854PPR_140441.3e-1041.5
TkA07G415380PF13812PPR_344794.1e-0627.5
TkA07G415380PF01535PPR49621.1e-2073.0
TkA07G415380PF04733Coatomer_E63860.01115.9
TkA07G415380PF13041PPR_266824e-2588.4
TkA07G415380PF12854PPR_166761.3e-1041.5
TkA07G415380PF01535PPR67801.1e-2073.0
TkA07G415380PF05632DUF792751200.2312.1
TkA07G415380PF04733Coatomer_E1001510.01115.9
TkA07G415380PF29070MSC6_N1031960.0314.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SIT7Arabidopsis thalianasp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g1360048.000%Swiss-ProtLow
O23337Arabidopsis thalianasp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g1482040.000%Swiss-ProtMedium
Q9S7F4Arabidopsis thalianasp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g0151041.300%Swiss-ProtMedium
Q9LFI1Arabidopsis thalianasp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360, mitochondrial44.600%Swiss-ProtLow
O23266Arabidopsis thalianasp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050, mitochondrial42.700%Swiss-ProtLow

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