Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1532 bp · TkA07G414200|TK1151|cDNA
GGGAAAGGGCTGACCGACCGCCTTTTTCTTGATAATTTCGTGCCGTATTTTCATCGATTTCTCTCTTTCGTTAACCCTAATCGCTAAATTCAATCTCGATTATTCAGATCGTTCCAGAACCTCTCAGATTCTTTCGATTACCGTCGTCGCCTATCGATTGACCTCCTTTTCAACGCCTGCCGTTACGGGAATCGATTTTTAGTTAAACATGGTACAGAAACGTCAATTGGCTGAAGAGGAGTACGATGTTTCACCGAAAC...
1017 bp · TkA07G414200|TK1151|CDS
ATGGTACAGAAACGTCAATTGGCTGAAGAGGAGTACGATGTTTCACCGAAACACTTGAAATTGGAAAATAGTTGCCAATTAGTTTCATGTTTGGAATTCCCTTCAAAAGTCATAGCTGAGGGACCTTTCTCTGTACAAATTTCTGAAATTGAGAAGGATCTTGTGAAATCAGAGCCACCAATTCCGCCTGTGGATACCTATTCTCATCTTTTACAGCTTCCACCATTGAAACAAGTCCCTATCGGGCCACAATTCCAAGC...
Protein
Download Protein FASTA338 aa · TkA07G414200|TK1151|PROTEIN
MVQKRQLAEEEYDVSPKHLKLENSCQLVSCLEFPSKVIAEGPFSVQISEIEKDLVKSEPPIPPVDTYSHLLQLPPLKQVPIGPQFQADIPELQNQSSSKTSNKFIGSCVIQMPETDLTIWNVVGRGRRHCYCQDPGSVTCVRLHITEARENLRGSIGDPRFSELGFCNIGETVASNWREEDERLYHEVVYSNPASLGKNFWDHLSDAFPSRTSNEIVSYYFNVFVLQRRAEQNRSDPMNADSDDDEWQGTSDDSSSEEDE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA07G414200 |
|---|---|
| TK1151 ID | TkA07G414200 |
| OH-1004 ID | LXL04_008681 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 48.500 |
| Protein coverage (%) | TK1151 98.521 / OH-1004 97.534Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA07G414200 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr07:104665502-104667876 (+) | |||||||||
| Description | Similar to ARID2: AT-rich interactive domain-containing protein 2 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0010628 positive regulation of gene expression Biological Process GO:0048235 pollen sperm cell differentiation Biological Process GO:0000118 histone deacetylase complex Cellular Component GO:0005634 nucleus Cellular Component GO:0005773 vacuole Cellular Component GO:0048555 generative cell nucleus Cellular Component GO:0048556 microsporocyte nucleus Cellular Component GO:0003677 DNA binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT2G46040 ath:AT4G11400 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01448ELM281-101 aaPF00249Myb_DNA-binding179-223 aaPF01448ELM2247-249 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA07G414200 | PF01448 | ELM2 | 81 | 101 | 0.00035 | 22.1 |
| TkA07G414200 | PF00249 | Myb_DNA-binding | 179 | 223 | 0.00095 | 20.0 |
| TkA07G414200 | PF01448 | ELM2 | 247 | 249 | 0.00035 | 22.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.