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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G413890
Reference: TK1151 Chr: Chr07 Coordinates: 104562111-104574256 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

6508 bp · TkA07G413890|TK1151|cDNA

ATCAGAAATTGGAATTGCAGCAATAAGCCCGACCCGGTCCATGACGTGGAGAACAATCAGAAGTCGGAACATAGAACACTACTTCACCGTTCCTCTACGACCGGACTGTCTTCCCGCCATCACAAAGAAGAAAAAGCAAAATGTTACTCGAACTGCCTCGATTAACCAACTCCCTGAGGGATCCATTCGAAGCCGATCAAGCTTACATCAATCGCAAATCCATCCTTCAATCATTCAACACTCGTCGCAGCTCTGGGAAG...

CDS

Download CDS FASTA

5493 bp · TkA07G413890|TK1151|CDS

ATGGCTATTTGCAGGGTGCTTGATTCAGATAAAGCTGGTGATGAGATAGCTGGTGACTTATTGGATCTAGTTGGTGATAGTGCATTTGAAACTGTTCAAGACCTTATCATGCATAGGAAGGAACTAGTGGAGGCCATTCACCATGGTATGCTGAATTTAAAATCTGAAAAAGTGGTTTCTGGCTCTCAACCACGCATGCCTAGCTATGGTACTCAGGTTACAATTCATACAGAATCAGAAAAGCAAATTGATAAACTAAG...

Protein

Download Protein FASTA

1830 aa · TkA07G413890|TK1151|PROTEIN

MAICRVLDSDKAGDEIAGDLLDLVGDSAFETVQDLIMHRKELVEAIHHGMLNLKSEKVVSGSQPRMPSYGTQVTIHTESEKQIDKLRRKEEKRHKKMDHGTDNDLSAMSFGSLLQASSKKSPFDDLIGHGEGSNTLTATALPQGTTRKHHKGYEEVSIPPTQTAPMKPGEKLIEIKELDEFAQTAFQGYKSLNRIQSRIFQTTYYTNENILVCAPTGAGKTNIAMIAVLHEIGQHFKDGYLHKNEFKIVYVAPMKALAAE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G413890
TK1151 IDTkA07G413890
OH-1004 IDLXL04_030588
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.600
Protein coverage (%)TK1151 100.000 / OH-1004 88.085
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G413890
LocationChr07:104562111-104574256 (+)
DescriptionSimilar to BRR2C: DExH-box ATP-dependent RNA helicase DExH14
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g61140 RNA helicase that plays an essential role in pre-mRNA splicing as component of the U5 snRNP and U4/U6-U5 tri-snRNP complexes. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030588 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006260 DNA replication Biological Process
GO:0006307 DNA alkylation repair Biological Process
GO:0006397 mRNA processing Biological Process
GO:0006513 protein monoubiquitination Biological Process
GO:0008380 RNA splicing Biological Process
GO:0032790 ribosome disassembly Biological Process
GO:0071569 protein ufmylation Biological Process
GO:0072344 rescue of stalled cytosolic ribosome Biological Process
GO:0140708 CAT tailing Biological Process
GO:1990116 ribosome-associated ubiquitin-dependent protein catabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
KEGG gene cross-reference
ath:AT5G61140
bta:538416
gga:421790
hsa:10973
mmu:77987
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.871
Rank 1 · TkA07G413890 · TK1151
Cytoplasm0.181
Rank 2 · TkA07G413890 · TK1151
Mitochondrion0.044
Rank 3 · TkA07G413890 · TK1151
Cell membrane0.017
Rank 4 · TkA07G413890 · TK1151
Endoplasmic reticulum0.009
Rank 5 · TkA07G413890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00437T2SSE162-222 aa
PF13604AAA_30192-332 aa
PF00270DEAD193-367 aa
PF04851ResIII200-366 aa
PF13245AAA_19202-331 aa
PF00580UvrD-helicase202-235 aa
PF01695IstB_IS21205-226 aa
PF20720nSTAND3206-236 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G413890PF00437T2SSE1622220.0008618.8
TkA07G413890PF13604AAA_301923325.4e-0523.7
TkA07G413890PF00270DEAD1933678.7e-61205.2
TkA07G413890PF04851ResIII2003663.8e-2692.7
TkA07G413890PF13245AAA_192023310.0002521.9
TkA07G413890PF00580UvrD-helicase2022350.1212.8
TkA07G413890PF01695IstB_IS212052260.07513.3
TkA07G413890PF20720nSTAND32062360.002118.5
TkA07G413890PF13401AAA_222073493.6e-0524.8
TkA07G413890PF05621TniB2072240.1712.1
TkA07G413890PF22527DEXQc_Suv32473350.0003820.8
TkA07G413890PF05621TniB3143300.1712.1
TkA07G413890PF00271Helicase_C4825701.6e-2177.3
TkA07G413890PF23445WHD_SNRNP2006016741.6e-51173.1
TkA07G413890PF02889Sec636929994.8e-155514.9
TkA07G413890PF00270DEAD8889048.7e-61205.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FNQ1Arabidopsis thalianasp|Q9FNQ1|DEXHE_ARATH DExH-box ATP-dependent RNA helicase DExH1480.300%Swiss-ProtHigh

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