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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G411080
Reference: TK1151 Chr: Chr07 Coordinates: 103853916-103857909 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1820 bp · TkA07G411080|TK1151|cDNA

TAATTCTTAAAACTTTCATATTTATCATAAATACATATGTTATATGTCAATATTATCGTATCATTTTATAGTCTCAACTCTCACACAATATACCTACATAAAAGTAAGAGTTGCCGTAAGTGGAGAAAACGGGGTTATAACTCCGTCTTCATGTTGTAAAAGACGAAACGGGGACCGTATAAGAACATCTCCTCATTCTCTTGATCTTCATCAAAAGCGGAGAGAGACTGAAAGAGATCCTATCTTTCATCGCATGTTCT...

CDS

Download CDS FASTA

900 bp · TkA07G411080|TK1151|CDS

ATGGATTTTTCTCAACCCCGACCCTATGGAGCCCAAGGTGCTAATCCCACGCACGACTTTCTCTCACTATATCCACCTGCTCAGCAAGATCCTACCCCCACCATTCCCGGCGGTTACCTTAAAACCCACGACTTCCTCCATGTTAAAGAAGGAAACAACAATAAGTTTCACCAAACGGCGACATATAGCGTTAGTCAAATATCATCGTATATGAATCAAATTCAAACCCAAAAGGTACCAAAAGCTGAAGGGATTGAAAC...

Protein

Download Protein FASTA

299 aa · TkA07G411080|TK1151|PROTEIN

MDFSQPRPYGAQGANPTHDFLSLYPPAQQDPTPTIPGGYLKTHDFLHVKEGNNNKFHQTATYSVSQISSYMNQIQTQKVPKAEGIETSGAQSSGSNNNDENSNCSSGFTIWEESKGKSGKIGNGVPWMTSHCTSSVKVDGGQRPNSPRSKHSATEQRRRSKINDRFSMLRGIIPHADKKRDKASFLLEVIEYIQFLQEKVHKYEDSYQGRKNKHPKMIPLNNRQTNQSEPSDAIIGVSSMYSQGISNTLTEALKSSGVDL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G411080
TK1151 IDTkA07G411080
OH-1004 IDLXL04_030561
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G411080
LocationChr07:103853916-103857909 (+)
DescriptionSimilar to BIM1: Transcription factor BIM1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g08130 Positive brassinosteroid-signaling protein.
A new class of transcription factors mediates brassinosteroid-regulated gene expression in Arabidopsis.2005 · DOI: 10.1016/j.cell.2004.11.044
At1g69010 Positive brassinosteroid-signaling protein. No verified direct reference in this release
At5g38860 Positive brassinosteroid-signaling protein. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030561 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009742 brassinosteroid mediated signaling pathway Biological Process
GO:1902448 positive regulation of shade avoidance Biological Process
GO:0005634 nucleus Cellular Component
GO:0000976 transcription cis-regulatory region binding Molecular Function
GO:0003677 DNA binding Molecular Function
GO:0003700 DNA-binding transcription factor activity Molecular Function
GO:0042802 identical protein binding Molecular Function
GO:0046983 protein dimerization activity Molecular Function
KEGG gene cross-reference
ath:AT1G69010
ath:AT5G08130
ath:AT5G38860
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.975
Rank 1 · TkA07G411080 · TK1151
Cytoplasm0.102
Rank 2 · TkA07G411080 · TK1151
Cell membrane0.023
Rank 3 · TkA07G411080 · TK1151
Endoplasmic reticulum0.014
Rank 4 · TkA07G411080 · TK1151
Plastid0.009
Rank 5 · TkA07G411080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16151DUF485947-63 aa
PF16151DUF485964-151 aa
PF00010HLH148-197 aa
PF23177bHLH_IRO3151-208 aa
PF23173bHLH_SAC51155-198 aa
PF20075DUF6471182-193 aa
PF22642MinC_N_1193-228 aa
PF30147SSP1194-298 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G411080PF16151DUF485947631.39.7
TkA07G411080PF16151DUF4859641511.39.7
TkA07G411080PF00010HLH1481978.4e-1658.2
TkA07G411080PF23177bHLH_IRO31512083.8e-0627.9
TkA07G411080PF23173bHLH_SAC511551980.02215.4
TkA07G411080PF20075DUF64711821930.2212.2
TkA07G411080PF22642MinC_N_11932280.0116.8
TkA07G411080PF30147SSP11942980.06413.4
TkA07G411080PF12521DUF37242382510.0713.8
TkA07G411080PF20075DUF64712402750.2212.2
TkA07G411080PF22642MinC_N_12462870.0116.8
TkA07G411080PF16151DUF48592642841.39.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LEZ3Arabidopsis thalianasp|Q9LEZ3|BIM1_ARATH Transcription factor BIM137.800%Swiss-ProtLow
Q9CAA4Arabidopsis thalianasp|Q9CAA4|BIM2_ARATH Transcription factor BIM233.000%Swiss-ProtLow
Q9FMB6Arabidopsis thalianasp|Q9FMB6|BIM3_ARATH Transcription factor BIM361.100%Swiss-ProtLow

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