RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G407350
Reference: TK1151 Chr: Chr07 Coordinates: 102452641-102454494 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1595 bp · TkA07G407350|TK1151|cDNA

CAAAATATTTACGAAGTTCTAGAGCCAATTTCTATATTCTACCAGCTTCTTCTTTCCCAAGTTTCAGAGTCCCTCCTTTCCAACCGCAATGTTTTCGTATGAAACTCTTCCACAACCCAAAACGGTCCTATCGGCCGCCGCCTCCCTCGCCGCCTCTGCCCTCCTCCTCAGAACAGTCGCTTCCGATCTCATTCCAACCGAATACTTCAAAACCCTCTTCAAACGCCTCTCCGCCCAACTCACCGTCGTCATCGAGGAAT...

CDS

Download CDS FASTA

963 bp · TkA07G407350|TK1151|CDS

ATGTTTTCGTATGAAACTCTTCCACAACCCAAAACGGTCCTATCGGCCGCCGCCTCCCTCGCCGCCTCTGCCCTCCTCCTCAGAACAGTCGCTTCCGATCTCATTCCAACCGAATACTTCAAAACCCTCTTCAAACGCCTCTCCGCCCAACTCACCGTCGTCATCGAGGAATCCGATGGCCTCACTCCCAACCAACTCTTCGACGCCGCCAATCTGTTCCTGGGCTCCAAGTTATCTCCGTCCACACTCAGAATAAAAGT...

Protein

Download Protein FASTA

320 aa · TkA07G407350|TK1151|PROTEIN

MFSYETLPQPKTVLSAAASLAASALLLRTVASDLIPTEYFKTLFKRLSAQLTVVIEESDGLTPNQLFDAANLFLGSKLSPSTLRIKVSKPEKDDELTVTVDRNQPIIDVFQTVKCKWILQTEQVDVPANSTARSEIRFFELSFHKKHKETVLKKYLPFVLKKATEIKEDKKAVKLHTVDYQGTDYWGSVILNHPATFKTMAMDPDKKAELLDDLHMFISRKEYYKRVGKAWKRGYLFYGPPGTGKSSLVAAMANHLKFDV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G407350
TK1151 IDTkA07G407350
OH-1004 IDLXL04_030491
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)100.000
Protein coverage (%)TK1151 99.375 / OH-1004 71.622
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G407350
LocationChr07:102452641-102454494 (-)
DescriptionSimilar to HSR4: Protein HYPER-SENSITIVITY-RELATED 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g50930 Protein HYPER-SENSITIVITY-RELATED 4. No verified direct reference in this release
At3g50940 AAA-ATPase At3g50940. No verified direct reference in this release
At2g18193 AAA-ATPase At2g18193. No verified direct reference in this release
At5g17760 AAA-ATPase At5g17760. No verified direct reference in this release
At2g18190 AAA-ATPase At2g18190. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030491 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002237 response to molecule of bacterial origin Biological Process
GO:0006950 response to stress Biological Process
GO:0009411 response to UV Biological Process
GO:0009617 response to bacterium Biological Process
GO:0009626 plant-type hypersensitive response Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009863 salicylic acid mediated signaling pathway Biological Process
GO:0012501 programmed cell death Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005740 mitochondrial envelope Cellular Component
GO:0005741 mitochondrial outer membrane Cellular Component
KEGG gene cross-reference
ath:AT2G18190
ath:AT2G18193
ath:AT3G50930
ath:AT3G50940
ath:AT5G17760
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.455
Rank 1 · TkA07G407350 · TK1151
Endoplasmic reticulum0.148
Rank 2 · TkA07G407350 · TK1151
Cytoplasm0.145
Rank 3 · TkA07G407350 · TK1151
Nucleus0.120
Rank 4 · TkA07G407350 · TK1151
Plastid0.097
Rank 5 · TkA07G407350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00004AAA12-65 aa
PF20030bpMoxR23-47 aa
PF14363AAA_assoc34-119 aa
PF13191AAA_1643-43 aa
PF13401AAA_2243-70 aa
PF23278Piwi_N56-101 aa
PF24883NPHP3_N115-125 aa
PF00519PPV_E1_C133-177 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G407350PF00004AAA12651.5e-1042.3
TkA07G407350PF20030bpMoxR23470.02214.6
TkA07G407350PF14363AAA_assoc341199.3e-2174.8
TkA07G407350PF13191AAA_1643430.000123.6
TkA07G407350PF13401AAA_2243700.003218.5
TkA07G407350PF23278Piwi_N561010.0913.4
TkA07G407350PF24883NPHP3_N1151250.0315.2
TkA07G407350PF00519PPV_E1_C1331770.03414.0
TkA07G407350PF00838TCTP1351691.110.3
TkA07G407350PF20703nSTAND12132510.2811.5
TkA07G407350PF00519PPV_E1_C2182580.03414.0
TkA07G407350PF13191AAA_162242760.000123.6
TkA07G407350PF12775AAA_72322610.03814.3
TkA07G407350PF13555AAA_292332540.01316.0
TkA07G407350PF24883NPHP3_N2332570.0315.2
TkA07G407350PF03193RsgA_GTPase2342610.1712.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8VZG2Arabidopsis thalianasp|Q8VZG2|HSR4_ARATH Protein HYPER-SENSITIVITY-RELATED 450.300%Swiss-ProtHigh
Q147F9Arabidopsis thalianasp|Q147F9|AATPC_ARATH AAA-ATPase At3g5094050.300%Swiss-ProtHigh
Q8GW96Arabidopsis thalianasp|Q8GW96|AATP3_ARATH AAA-ATPase At2g1819346.300%Swiss-ProtMedium
Q9FN75Arabidopsis thalianasp|Q9FN75|AATPI_ARATH AAA-ATPase At5g1776044.400%Swiss-ProtMedium
F4IQG2Arabidopsis thalianasp|F4IQG2|AATP2_ARATH AAA-ATPase At2g1819041.700%Swiss-ProtMedium

JBrowse

View in Genome Browser