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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G407030
Reference: TK1151 Chr: Chr07 Coordinates: 102350240-102354003 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2407 bp · TkA07G407030|TK1151|cDNA

AAAAAAAGCTCTCTCTCTCTCTCACATTCCATCATATCTCTCTTGCACCTCTCTCTCTCTCTCTCATTCTATAAAAAAAAGCAAGTTTTTCTATAGAAAAGCTTTGAAAAAAAGCTTTAAAAAAAAACCTCTACACTATGGGTGTTAAGCTTTTTTTGAGCTTTTTGTTTTGAAAAAAGCTTTAAAAGAAAAGCCATAGTGGATGATCTTAGTATTCCTTCTGCTAATTTCTGCTTCATCAAATCAAATCCCTTTTTTAA...

CDS

Download CDS FASTA

1545 bp · TkA07G407030|TK1151|CDS

ATGGATTATTGCTGTGCTACCTTCAAACCTAATCTGCATGTTCGAAAAAGTATCGAAAATGGGTTCTGGGGAAAGAAGATCGAACCTCTCGCAACTCATTTCTGTAAAAGTTCAAGAACTCAAAACAGAAAAATCAAGAAACTTGGAGTTACTCATTCTGTTCTCAAATCACCAATCGACGAGGAAATGCTGACATTTGAGACGCCATTTTTCGATGAACGAAAAGTAGACCCAAAAACAGTAGCCTCGATTATCTTGGG...

Protein

Download Protein FASTA

514 aa · TkA07G407030|TK1151|PROTEIN

MDYCCATFKPNLHVRKSIENGFWGKKIEPLATHFCKSSRTQNRKIKKLGVTHSVLKSPIDEEMLTFETPFFDERKVDPKTVASIILGGGAGTRLFPLTGKRAKPAVPIGGCYRLIDVPMSNCINSGIRKIFILTQFNSFSLNRHLARTYNFGNGMSFGDGFVEVLAATQTPGELGKKWFQGTADAVRQFIWVFEDAKNKNVENILILSGDHLYRMDYMDFVQKHVDTNADITVSCIPMDHSRASDYGLMKIDDTGRVVHF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G407030
TK1151 IDTkA07G407030
OH-1004 IDLXL04_030488
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G407030
LocationChr07:102350240-102354003 (-)
DescriptionSimilar to AGPS1: Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g27680 This protein plays a role in synthesis of starch. No verified direct reference in this release
At4g39210 This protein plays a role in synthesis of starch. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030488 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005978 glycogen biosynthetic process Biological Process
GO:0019252 starch biosynthetic process Biological Process
GO:0009501 amyloplast Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0010170 glucose-1-phosphate adenylyltransferase complex Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0008878 glucose-1-phosphate adenylyltransferase activity Molecular Function
KEGG gene cross-reference
ath:AT1G27680
ath:AT4G39210
bvg:104889614
sot:102600909
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.541
Rank 1 · TkA07G407030 · TK1151
Nucleus0.206
Rank 2 · TkA07G407030 · TK1151
Mitochondrion0.118
Rank 3 · TkA07G407030 · TK1151
Plastid0.111
Rank 4 · TkA07G407030 · TK1151
Peroxisome0.079
Rank 5 · TkA07G407030 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00483NTP_transferase83-360 aa
PF07959Fucose_pyrophosphorylase203-313 aa
PF25247LbH_GLGC379-513 aa
PF24894Hexapep_GlmU379-445 aa
PF07959Fucose_pyrophosphorylase386-430 aa
PF25087GMPPB_C387-433 aa
PF25084LbH_EIF2B388-431 aa
PF00132Hexapep394-411 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G407030PF00483NTP_transferase833605.5e-75252.8
TkA07G407030PF07959Fucose_pyrophosphorylase2033130.01415.1
TkA07G407030PF25247LbH_GLGC3795131.8e-54184.0
TkA07G407030PF24894Hexapep_GlmU3794453.5e-0937.4
TkA07G407030PF07959Fucose_pyrophosphorylase3864300.01415.1
TkA07G407030PF25087GMPPB_C3874336.2e-0626.7
TkA07G407030PF25084LbH_EIF2B3884311.6e-0525.5
TkA07G407030PF00132Hexapep3944110.1112.9
TkA07G407030PF24894Hexapep_GlmU4535023.5e-0937.4
TkA07G407030PF07959Fucose_pyrophosphorylase4534820.01415.1
TkA07G407030PF25084LbH_EIF2B4544801.6e-0525.5
TkA07G407030PF00132Hexapep4544790.1112.9
TkA07G407030PF25087GMPPB_C4615136.2e-0626.7
TkA07G407030PF00132Hexapep5015140.1112.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P55230Arabidopsis thalianasp|P55230|GLGL2_ARATH Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic73.400%Swiss-ProtHigh
P55231Arabidopsis thalianasp|P55231|GLGL3_ARATH Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic66.200%Swiss-ProtHigh

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