TkA07G407020 | RubberDandelionOmics

Gene overview

TkA07G407020

Reference: TK1151 Chr: Chr07 Coordinates: 102346335-102350266 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2700 bp · TkA07G407020|TK1151|cDNA

GAAACATACAACTAAGATGATGGTACAGAAAATTCCGGTTATACCCCTTTGGTCTCTTCTTCCTTCTACCTTCGATTTGTCCCGTCTCTGTACCACTGCCTCTGCAAACAACCACAAAACCTTACACTAATTTCAAAATAAGACAATCATACAAAAAACATTCATTTCTTAAAACCCTAAAATAGACCTTCAATGGAGTCTCTCTCACGTCCTTTTCACTCCAGAAAACTCTCCAATCCTACTACTACTACTACTACCTT...

CDS

Download CDS FASTA

2220 bp · TkA07G407020|TK1151|CDS

ATGGAGTCTCTCTCACGTCCTTTTCACTCCAGAAAACTCTCCAATCCTACTACTACTACTACTACCTTCTCACCCAAAAAACCGCACGACGGTGTTTTCTCCGGCCACCGCCACACCTACGCCGGAGCTTCACCCATTGACGTCCAAGACTACCGTGAGATTTTCGGTAGCTCTCCAGCTGTTTCTTCGATTCCTGTGCTTGATCTTTCAACCTTAAGAGAACCATCAGATGCTTTGAACTTGAACTTGAAGTACCGGAG...

Protein

Download Protein FASTA

739 aa · TkA07G407020|TK1151|PROTEIN

MESLSRPFHSRKLSNPTTTTTTFSPKKPHDGVFSGHRHTYAGASPIDVQDYREIFGSSPAVSSIPVLDLSTLREPSDALNLNLKYRSSRPEPDYSKIFRCFPDNDVAVSCEKSFARDKPRSPSSKTSSSPDSDNFSHQSSDVLNRFNMSYNKISQKSTDGLDGTKHVTQFHAVPGFTRFIDEEAVPPLMEAKKHESFKSFDNLSTVSSPTTVTNRKDYPKRSTANNSSGTFSPVYVDVNSAASTSAAALKQAIEKAQESI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G407020`
TK1151 ID	TkA07G407020
OH-1004 ID	LXL04_030487
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	94.500
Protein coverage (%)	TK1151 97.023 / OH-1004 93.813 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G407020

Location Chr07:102346335-102350266 (+)

Description Similar to AUL1: Auxilin-like protein 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g75310`	Auxilin-like protein 1.	No verified direct reference in this release
`At4g12780`	Promotes uncoating of clathrin-coated vesicles.	No verified direct reference in this release
`At4g12770`	Promotes probably uncoating of clathrin-coated vesicles.	No verified direct reference in this release
`At1g75100`	Required for chloroplast photorelocation movement; chloroplast accumulation upon low blue light and for chloroplast movement to the bottom of cells in darkness, by modulating chloroplast actin (Cp-actin) filaments distribution, appearance and disappearance.	An auxilin-like J-domain protein, JAC1, regulates phototropin-mediated chloroplast movement in Arabidopsis.2005 · DOI: 10.1104/pp.105.067371 Overexpression of an auxilin-like gene (F9E10.5) can suppress Al uptake in roots of Arabidopsis.2007 · DOI: 10.1093/jxb/erl221 Crystallographic and functional analyses of J-domain of JAC1 essential for chloroplast photorelocation movement in Arabidopsis thaliana.2010 · DOI: 10.1093/pcp/pcq089 Red light, Phot1 and JAC1 modulate Phot2-dependent reorganization of chloroplast actin filaments and chloroplast avoidance movement.2011 · DOI: 10.1093/pcp/pcr087

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030487 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007015 actin filament organization Biological Process

GO:0009903 chloroplast avoidance movement Biological Process

GO:0009904 chloroplast accumulation movement Biological Process

GO:0045806 negative regulation of endocytosis Biological Process

GO:0045926 negative regulation of growth Biological Process

GO:0071483 cellular response to blue light Biological Process

GO:0072318 clathrin coat disassembly Biological Process

GO:0072583 clathrin-dependent endocytosis Biological Process

GO:0080183 response to photooxidative stress Biological Process

GO:1900186 negative regulation of clathrin-dependent endocytosis Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT1G75100

ath:AT1G75310

ath:AT4G12770

ath:AT4G12780

spo:2542191

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.495

Rank 1 · TkA07G407020 · TK1151

Nucleus0.313

Rank 2 · TkA07G407020 · TK1151

Cell membrane0.227

Rank 3 · TkA07G407020 · TK1151

Endoplasmic reticulum0.067

Rank 4 · TkA07G407020 · TK1151

Golgi apparatus0.058

Rank 5 · TkA07G407020 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00428Ribosomal_60s240-258 aa

PF00428Ribosomal_60s294-367 aa

PF00428Ribosomal_60s461-476 aa

PF00226DnaJ470-488 aa

PF00428Ribosomal_60s482-548 aa

PF00428Ribosomal_60s561-582 aa

PF00226DnaJ603-628 aa

PF00428Ribosomal_60s610-633 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G407020	`PF00428`	Ribosomal_60s	240	258	1.9	9.8
TkA07G407020	`PF00428`	Ribosomal_60s	294	367	1.9	9.8
TkA07G407020	`PF00428`	Ribosomal_60s	461	476	1.9	9.8
TkA07G407020	`PF00226`	DnaJ	470	488	0.005	17.6
TkA07G407020	`PF00428`	Ribosomal_60s	482	548	1.9	9.8
TkA07G407020	`PF00428`	Ribosomal_60s	561	582	1.9	9.8
TkA07G407020	`PF00226`	DnaJ	603	628	0.005	17.6
TkA07G407020	`PF00428`	Ribosomal_60s	610	633	1.9	9.8
TkA07G407020	`PF00226`	DnaJ	688	715	0.005	17.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FWS1`	Arabidopsis thaliana	sp\|Q9FWS1\|AUL1_ARATH Auxilin-like protein 1	72.100%	Swiss-Prot	Low
`Q9SU08`	Arabidopsis thaliana	sp\|Q9SU08\|AUXI1_ARATH Auxilin-related protein 1	64.500%	Swiss-Prot	Low
`Q0WQ57`	Arabidopsis thaliana	sp\|Q0WQ57\|AUXI2_ARATH Auxilin-related protein 2	64.500%	Swiss-Prot	Low
`Q9C9Q4`	Arabidopsis thaliana	sp\|Q9C9Q4\|JAC1_ARATH J domain-containing protein required for chloroplast accumulation response 1	61.300%	Swiss-Prot	Low

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