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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G403380
Reference: TK1151 Chr: Chr07 Coordinates: 101374441-101376981 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1796 bp · TkA07G403380|TK1151|cDNA

AAAAAGTAAACAAATTTAAATCGTGATTCAGAACTTACCAAGCACGAACAGTCAACCACGTCTGGCTTTCAATCTGTATCTACTCTTCAGCGAATCCCTTTCCCATTCTTCACAGCATTTCTAAGCACACCACCATCGATGAACACTAATCAAATCCATTATTAGGGTTTCGCAAATCCCCATAATCTTTTCTCATTAGAAGAATTCAGAGAAGCTTCGACACCGTAAGCTGTTTTGGGAGAGGCAAAACCCCTCCACAG...

CDS

Download CDS FASTA

1317 bp · TkA07G403380|TK1151|CDS

ATGGCGGGTCCTGTGGGTCGTAGAGGAACCAACGCGTCGCAATCGGTACGTGGATCTAGAATTGCCGTTGCAATTGTCATCGGAATTTTACTCGGATGCGTCTTCGCAGTTTTATACCCTCACGGCCTCTTCTCCGACAATTCCAATCCGGCTTCTCATTTCCGGAGTCGCCGTCTTTCCAAATCGAATCCACAGATTGGATCAACTTGTGAAACTACAGATCAAGTCAACAAATTAAAATCAGATATTACAGATCTATC...

Protein

Download Protein FASTA

438 aa · TkA07G403380|TK1151|PROTEIN

MAGPVGRRGTNASQSVRGSRIAVAIVIGILLGCVFAVLYPHGLFSDNSNPASHFRSRRLSKSNPQIGSTCETTDQVNKLKSDITDLSTTNDELKKQVRDLTAKLQASEQKNGQSDQQMVTVVTTDPQKPGPFGTVKGSSTNPTILPDPTVNPRLAKILEKITTKKEVIVALANSNVKSMLEVSVSSIKKAGISNYLVVALDDGIVDFCKENDVAYYKRDPDEGIDSVAKSGGNHAVSGLKFRILREFLQLGYGVLLSDVD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G403380
TK1151 IDTkA07G403380
OH-1004 IDLXL04_030443
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G403380
LocationChr07:101374441-101376981 (-)
DescriptionSimilar to RRA3: Arabinosyltransferase RRA3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g19360 Plays a role in the arabinosylation of cell wall components. No verified direct reference in this release
At1g75110 Plays a role in the arabinosylation of cell wall components.
Molecular characterization of two Arabidopsis thaliana glycosyltransferase mutants, rra1 and rra2, which have a reduced residual arabinose content in a polymer tightly associated with the cellulosic wall residue.2007 · DOI: 10.1007/s11103-007-9162-y
At1g75120 Plays a role in the arabinosylation of cell wall components.
Molecular characterization of two Arabidopsis thaliana glycosyltransferase mutants, rra1 and rra2, which have a reduced residual arabinose content in a polymer tightly associated with the cellulosic wall residue.2007 · DOI: 10.1007/s11103-007-9162-y

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030443 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0031506 cell wall glycoprotein biosynthetic process Biological Process
GO:0042546 cell wall biogenesis Biological Process
GO:0052325 cell wall pectin biosynthetic process Biological Process
GO:0071555 cell wall organization Biological Process
GO:0080147 root hair cell development Biological Process
GO:0000138 Golgi trans cisterna Cellular Component
GO:0000139 Golgi membrane Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005768 endosome Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005797 Golgi medial cisterna Cellular Component
KEGG gene cross-reference
ath:AT1G19360
ath:AT1G70630
ath:AT1G75110
ath:AT1G75120
ath:AT2G35610
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.802
Rank 1 · TkA07G403380 · TK1151
Endoplasmic reticulum0.132
Rank 2 · TkA07G403380 · TK1151
Cytoplasm0.082
Rank 3 · TkA07G403380 · TK1151
Cell membrane0.056
Rank 4 · TkA07G403380 · TK1151
Extracellular0.044
Rank 5 · TkA07G403380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13886TM7S3_TM19813-44 aa
PF04791LMBR121-122 aa
PF08614ATG1651-118 aa
PF07989Cnn_1N53-104 aa
PF17098Wtap57-116 aa
PF21037CCDC138_cc70-115 aa
PF10211Ax_dynein_light71-117 aa
PF07926TPR_MLP1_271-119 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G403380PF13886TM7S3_TM19813440.2911.5
TkA07G403380PF04791LMBR1211220.1811.3
TkA07G403380PF08614ATG16511180.001119.8
TkA07G403380PF07989Cnn_1N531040.04414.7
TkA07G403380PF17098Wtap571160.08813.4
TkA07G403380PF21037CCDC138_cc701150.411.5
TkA07G403380PF10211Ax_dynein_light711170.01416.1
TkA07G403380PF07926TPR_MLP1_2711190.06114.1
TkA07G403380PF28297CCDC3_C711160.1113.5
TkA07G403380PF24922ACBP4_C711100.1513.0
TkA07G403380PF31269Cubilin_N711050.5611.0
TkA07G403380PF06156YabA711170.7511.1
TkA07G403380PF04977DivIC721010.06613.7
TkA07G403380PF11559ADIP721170.07713.8
TkA07G403380PF25785TPR731220.009417.0
TkA07G403380PF01763Herpes_UL6731230.02413.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LN62Arabidopsis thalianasp|Q9LN62|RRA3_ARATH Arabinosyltransferase RRA370.300%Swiss-ProtHigh
Q9C9Q5Arabidopsis thalianasp|Q9C9Q5|RRA2_ARATH Arabinosyltransferase RRA266.400%Swiss-ProtHigh
Q9C9Q6Arabidopsis thalianasp|Q9C9Q6|RRA1_ARATH Arabinosyltransferase RRA160.000%Swiss-ProtHigh

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