TkA07G387730 | RubberDandelionOmics

Gene overview

TkA07G387730

Reference: TK1151 Chr: Chr07 Coordinates: 97231911-97234144 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1602 bp · TkA07G387730|TK1151|cDNA

ATGATGAAGAACCGTGGAGCCGTCCCAAATACTGGCAGTAAGAAGTCTAAGGGGAGTCATGCATCACTTTCAGGAAGCAATCTGGGTTCTGGGGGCAAGCTTGCATCAAATGACTCTAGTTCTCGTCGTATACACCGCATACTTGCACCATATGATGTTGCCCCTACTAATAGTAGAGGCGCCAGAGCTCCATCACATGAGTCTACTCCCGTAAGACATGGAGGCGCCATACCTCGATCACATGAGTCTACTTCTACTAG...

CDS

Download CDS FASTA

1602 bp · TkA07G387730|TK1151|CDS

ATGATGAAGAACCGTGGAGCCGTCCCAAATACTGGCAGTAAGAAGTCTAAGGGGAGTCATGCATCACTTTCAGGAAGCAATCTGGGTTCTGGGGGCAAGCTTGCATCAAATGACTCTAGTTCTCGTCGTATACACCGCATACTTGCACCATATGATGTTGCCCCTACTAATAGTAGAGGCGCCAGAGCTCCATCACATGAGTCTACTCCCGTAAGACATGGAGGCGCCATACCTCGATCACATGAGTCTACTTCTACTAG...

Protein

Download Protein FASTA

533 aa · TkA07G387730|TK1151|PROTEIN

MMKNRGAVPNTGSKKSKGSHASLSGSNLGSGGKLASNDSSSRRIHRILAPYDVAPTNSRGARAPSHESTPVRHGGAIPRSHESTSTSHGVVRSVLPISPEFNRTTNVVPPGGYVGLLNQMEPDMEDDDGGYDDEDLGEDDDMDDGEDIEDDREGTPHGSNSTYIPAYGTPQRPFITWVGKKFGRSFVHREIGKLVNQYLEGPWISFKEIPKENIEPLWVRFKTLYVWDSTQEQRMNTNFQNVVACRYRDAMRMFRIKSAL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G387730`
TK1151 ID	TkA07G387730
OH-1004 ID	LXL04_013096
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	43.700
Protein coverage (%)	TK1151 53.096 / OH-1004 78.237 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA07G387730`
Location	Chr07:97231911-97234144 (+)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_013096` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.961

Rank 1 · TkA07G387730 · TK1151

Cytoplasm0.150

Rank 2 · TkA07G387730 · TK1151

Mitochondrion0.017

Rank 3 · TkA07G387730 · TK1151

Cell membrane0.013

Rank 4 · TkA07G387730 · TK1151

Extracellular0.006

Rank 5 · TkA07G387730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24627PUMA_CC33-48 aa

PF03004Transposase_2465-93 aa

PF03004Transposase_24289-435 aa

PF03004Transposase_24409-425 aa

PF25762HAUS1451-524 aa

PF09893DUF2120454-515 aa

PF24627PUMA_CC458-507 aa

PF03004Transposase_24480-503 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G387730	`PF24627`	PUMA_CC	33	48	0.16	12.7
TkA07G387730	`PF03004`	Transposase_24	65	93	1.7e-13	51.7
TkA07G387730	`PF03004`	Transposase_24	289	435	1.7e-13	51.7
TkA07G387730	`PF03004`	Transposase_24	409	425	1.7e-13	51.7
TkA07G387730	`PF25762`	HAUS1	451	524	0.094	13.2
TkA07G387730	`PF09893`	DUF2120	454	515	1.1	10.0
TkA07G387730	`PF24627`	PUMA_CC	458	507	0.16	12.7
TkA07G387730	`PF03004`	Transposase_24	480	503	1.7e-13	51.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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