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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G375620
Reference: TK1151 Chr: Chr07 Coordinates: 94244103-94253960 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

6281 bp · TkA07G375620|TK1151|cDNA

TTCCATCCCTGCCTTCGATCCTCCTCCAGCTTAGTGCTCCTGTGTTCGATTATCCAACCTACACGACGAAGTTGAATTACATAATGCGTTTCAGAGCACGAGTGTTTAAAATTCGGCGTTAGAATTACACAATAATCGATCTGATCAATTCGACAACCAGTTTGGTGGCTCAGGCACTTTTCGATTTTCTACTATCAATCAAGTATTGCTGTGATTGTTTCATACGATTAGATTTCACTATAAATAAATGGATTCTGATG...

CDS

Download CDS FASTA

5412 bp · TkA07G375620|TK1151|CDS

ATGGATTCTGATGCTGGTAATACATCTCAAGATGGGAGGGCCACTGATGACCGTGATGAAGATGATGATGATGAGTATGAAGATGCTCGTGATGGCAATCGTCTTTTGGAATTCATGTTTGGAAATATCGATGGGTCTGGTGATCTTGACATTGATTACCTTGATGAGGATGCAAAGGAGCATCTTGCTGCATTAGCTGACAAACTTGGTTCATCACTAACAGATATCCATCTATCAGTAAAAACCTCCCAAAAGTCTTC...

Protein

Download Protein FASTA

1803 aa · TkA07G375620|TK1151|PROTEIN

MDSDAGNTSQDGRATDDRDEDDDDEYEDARDGNRLLEFMFGNIDGSGDLDIDYLDEDAKEHLAALADKLGSSLTDIHLSVKTSQKSSDATEQDYDVKDENAVDYEDIDEQYEGPEVQALTEEDYLLPKSDYVSTTVPPVAPSSIFDDDNYDEDEEEEEGEGLQKEQDPVLDNNVDQVDQTQTTTSLPEDDNTNAAVEIEISDPDVVELPKEDTDISEEPLEAKSSTPLPVLCVEDGNVILRFSEIFAIHEPLKKATKREQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G375620
TK1151 IDTkA07G375620
OH-1004 IDLXL04_030101
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G375620
LocationChr07:94244103-94253960 (+)
DescriptionSimilar to TAF1: Transcription initiation factor TFIID subunit 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g32750 TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. No verified direct reference in this release
At3g19040 TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription.
Arabidopsis HAF2 gene encoding TATA-binding protein (TBP)-associated factor TAF1, is required to integrate light signals to regulate gene expression and growth.2005 · DOI: 10.1074/jbc.m409000200
Arabidopsis GCN5, HD1, and TAF1/HAF2 interact to regulate histone acetylation required for light-responsive gene expression.2006 · DOI: 10.1105/tpc.106.043489

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0645700 Largest component and core scaffold of the TFIID basal transcription factor complex. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030101 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009294 DNA-mediated transformation Biological Process
GO:0009416 response to light stimulus Biological Process
GO:0051123 RNA polymerase II preinitiation complex assembly Biological Process
GO:0005634 nucleus Cellular Component
GO:0005669 transcription factor TFIID complex Cellular Component
GO:0004402 histone acetyltransferase activity Molecular Function
GO:0016251 RNA polymerase II general transcription initiation factor activity Molecular Function
GO:0017025 TBP-class protein binding Molecular Function
KEGG gene cross-reference
ath:AT1G32750
ath:AT3G19040
ddi:DDB_G0292242
osa:9266475
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.952
Rank 1 · TkA07G375620 · TK1151
Cytoplasm0.132
Rank 2 · TkA07G375620 · TK1151
Cell membrane0.018
Rank 3 · TkA07G375620 · TK1151
Mitochondrion0.017
Rank 4 · TkA07G375620 · TK1151
Endoplasmic reticulum0.008
Rank 5 · TkA07G375620 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09247TBP-binding23-70 aa
PF01381HTH_360-75 aa
PF11976Rad60-SLD75-103 aa
PF12157DUF3591517-1081 aa
PF00439Bromodomain556-570 aa
PF11976Rad60-SLD600-670 aa
PF00240ubiquitin602-672 aa
PF18037Ubiquitin_5613-665 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G375620PF09247TBP-binding23702.6e-0937.9
TkA07G375620PF01381HTH_360750.08813.6
TkA07G375620PF11976Rad60-SLD751035.3e-0833.3
TkA07G375620PF12157DUF359151710815.9e-120401.7
TkA07G375620PF00439Bromodomain5565701.3e-1867.5
TkA07G375620PF11976Rad60-SLD6006705.3e-0833.3
TkA07G375620PF00240ubiquitin6026727.9e-1245.5
TkA07G375620PF18037Ubiquitin_56136650.0005820.8
TkA07G375620PF10302Dsc3_N6176641.310.3
TkA07G375620PF13881Rad60-SLD_26326820.07114.0
TkA07G375620PF01381HTH_3108411100.08813.6
TkA07G375620PF12157DUF3591110311355.9e-120401.7
TkA07G375620PF15288zf-CCHC_6134113622.3e-0524.9
TkA07G375620PF10302Dsc3_N158916281.310.3
TkA07G375620PF00439Bromodomain169417681.3e-1867.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8LRK9Arabidopsis thalianasp|Q8LRK9|TAF1_ARATH Transcription initiation factor TFIID subunit 148.800%Swiss-ProtMedium
Q6PUA2Arabidopsis thalianasp|Q6PUA2|TAF1B_ARATH Transcription initiation factor TFIID subunit 1b44.800%Swiss-ProtMedium
Q67W65Oryza sativa subsp. japonicasp|Q67W65|TAF1_ORYSJ Transcription initiation factor TFIID subunit 149.300%Swiss-ProtMedium

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