TkA07G371210 | RubberDandelionOmics

Gene overview

TkA07G371210

Reference: TK1151 Chr: Chr07 Coordinates: 93107032-93115993 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1948 bp · TkA07G371210|TK1151|cDNA

CTTATATCTAACAATGCCTTCAAGTATCAAAATCGGTTATTCTTCTTGTTATCACTAGCAAAATTCACTCATTTGGAAGCACGGCATCGACATCATAAGTTTTTTGTGAGGGAAGCATCATATACGCGTCTTTGTGAAACGAAAAGTATTTTAACAGTAAACGGAGAATTTCCGGGGCCAACGTTGCATGTCCATGAAGGAGATACAATTTATGTAAAGGTCCATAACAATGGAAAATATAACATCACCATTCATTGGCA...

CDS

Download CDS FASTA

1035 bp · TkA07G371210|TK1151|CDS

CTTATATCTAACAATGCCTTCAAGTATCAAAATCGGTTATTCTTCTTGTTATCACTAGCAAAATTCACTCATTTGGAAGCACGGCATCGACATCATAAGTTTTTTGTGAGGGAAGCATCATATACGCGTCTTTGTGAAACGAAAAGTATTTTAACAGTAAACGGAGAATTTCCGGGGCCAACGTTGCATGTCCATGAAGGAGATACAATTTATGTAAAGGTCCATAACAATGGAAAATATAACATCACCATTCATTGGCA...

Protein

Download Protein FASTA

344 aa · TkA07G371210|TK1151|PROTEIN

LISNNAFKYQNRLFFLLSLAKFTHLEARHRHHKFFVREASYTRLCETKSILTVNGEFPGPTLHVHEGDTIYVKVHNNGKYNITIHWHGVTQPRNPWSDGPEYITQCPIQPGNSFNYKIIFSEEIGTLWWHAHSDWSRATVHGAIIIYPKHGTTYPFPNPYRQLPIIFGEWWKKDVMEVLEEFVASGGPPRNSDAYTINGQPGDLYPCSNQDTFKLNVKYGKTYLLHMVNAGMNEILFFAIANHSLTIVGADGFYTKPFTK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G371210`
TK1151 ID	TkA07G371210
OH-1004 ID	LXL04_030024
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	97.500
Protein coverage (%)	TK1151 91.279 / OH-1004 55.477 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G371210

Location Chr07:93107032-93115993 (+)

Description Similar to TT10: Laccase-15

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g09360`	Lignin degradation and detoxification of lignin-derived products.	No verified direct reference in this release
`At5g48100`	Lignin degradation and detoxification of lignin-derived products (By similarity).	TRANSPARENT TESTA10 encodes a laccase-like enzyme involved in oxidative polymerization of flavonoids in Arabidopsis seed coat.2005 · DOI: 10.1105/tpc.105.035154 Involvement of AtLAC15 in lignin synthesis in seeds and in root elongation of Arabidopsis.2006 · DOI: 10.1007/s00425-006-0300-6 Mutant identification and characterization of the laccase gene family in Arabidopsis.2006 · DOI: 10.1093/jxb/erl022

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0749700`	Lignin degradation and detoxification of lignin-derived products.	No verified direct reference in this release
`Os11g0696900`	Lignin degradation and detoxification of lignin-derived products.	No verified direct reference in this release
`Os01g0374600`	Lignin degradation and detoxification of lignin-derived products.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030024 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009809 lignin biosynthetic process Biological Process

GO:0009813 flavonoid biosynthetic process Biological Process

GO:0010023 proanthocyanidin biosynthetic process Biological Process

GO:0046274 lignin catabolic process Biological Process

GO:0046688 response to copper ion Biological Process

GO:0005576 extracellular region Cellular Component

GO:0048046 apoplast Cellular Component

GO:0005507 copper ion binding Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

GO:0052716 hydroquinone:oxygen oxidoreductase activity Molecular Function

KEGG gene cross-reference

ath:AT5G09360

ath:AT5G48100

dosa:Os01g0827300

dosa:Os11g0696900

osa:107276196

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.851

Rank 1 · TkA07G371210 · TK1151

Cytoplasm0.060

Rank 2 · TkA07G371210 · TK1151

Cell membrane0.046

Rank 3 · TkA07G371210 · TK1151

Endoplasmic reticulum0.040

Rank 4 · TkA07G371210 · TK1151

Nucleus0.022

Rank 5 · TkA07G371210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07732Cu-oxidase_337-149 aa

PF00394Cu-oxidase48-77 aa

PF00394Cu-oxidase163-313 aa

PF07732Cu-oxidase_3214-290 aa

PF14286DHHW214-293 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G371210	`PF07732`	Cu-oxidase_3	37	149	2.8e-43	147.5
TkA07G371210	`PF00394`	Cu-oxidase	48	77	3.8e-41	141.5
TkA07G371210	`PF00394`	Cu-oxidase	163	313	3.8e-41	141.5
TkA07G371210	`PF07732`	Cu-oxidase_3	214	290	2.8e-43	147.5
TkA07G371210	`PF14286`	DHHW	214	293	0.19	11.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FY79`	Arabidopsis thaliana	sp\|Q9FY79\|LAC14_ARATH Laccase-14	58.800%	Swiss-Prot	High
`Q84J37`	Arabidopsis thaliana	sp\|Q84J37\|LAC15_ARATH Laccase-15	61.300%	Swiss-Prot	High
`Q6Z8L2`	Oryza sativa subsp. japonica	sp\|Q6Z8L2\|LAC9_ORYSJ Putative laccase-9	59.900%	Swiss-Prot	High
`Q2QZ80`	Oryza sativa subsp. japonica	sp\|Q2QZ80\|LAC21_ORYSJ Laccase-21	58.900%	Swiss-Prot	High
`Q5ZCW1`	Oryza sativa subsp. japonica	sp\|Q5ZCW1\|LAC1_ORYSJ Putative laccase-1	56.300%	Swiss-Prot	High

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