How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp

Gene overview

TkA07G369640
Reference: TK1151 Chr: Chr07 Coordinates: 92646449-92647237 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

375 bp · TkA07G369640|TK1151|cDNA

ATGAAGAAATCATCAAAATTTCTTCCTGTGATTGGTTGGTCAATGTGGTTTGCTGAGTATCTTTTTCTTGAGAGAAGCTGGGCTAAAGATGAAAGTACTCTAAAGGCAGGTCTTGAAAGGCTAAAAGACTACCCTCAGCCGTTTTGGTTGGCCCTTTTTGTTGAAGGGACTCGATTCACTCCAGCAAAGGTTTTAGCAGCTCAAGAATATGCTTCTTCAATGGGACTCCCTGTTCCTAGAAATGTTTTAATTCCAAGAAC...

375 bp · TkA07G369640|TK1151|CDS

ATGAAGAAATCATCAAAATTTCTTCCTGTGATTGGTTGGTCAATGTGGTTTGCTGAGTATCTTTTTCTTGAGAGAAGCTGGGCTAAAGATGAAAGTACTCTAAAGGCAGGTCTTGAAAGGCTAAAAGACTACCCTCAGCCGTTTTGGTTGGCCCTTTTTGTTGAAGGGACTCGATTCACTCCAGCAAAGGTTTTAGCAGCTCAAGAATATGCTTCTTCAATGGGACTCCCTGTTCCTAGAAATGTTTTAATTCCAAGAAC...

124 aa · TkA07G369640|TK1151|PROTEIN

MKKSSKFLPVIGWSMWFAEYLFLERSWAKDESTLKAGLERLKDYPQPFWLALFVEGTRFTPAKVLAAQEYASSMGLPVPRNVLIPRTKGFVTSVSEMRSFVPAIYHKLMKLLHNGVVTPRFLDN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G369640
TK1151 IDTkA07G369640
OH-1004 IDLXL04_036286
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)93.300
Protein coverage (%)TK1151 84.677 / OH-1004 23.864
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G369640
LocationChr07:92646449-92647237 (+)
DescriptionSimilar to LPAT2: 1-acyl-sn-glycerol-3-phosphate acyltransferase 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g57650 Converts lysophosphatidic acid (LPA) into phosphatidic acid by incorporating acyl moiety at the 2 position.
At1g51260 Converts lysophosphatidic acid (LPA) into phosphatidic acid by incorporating acyl moiety at the 2 position. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036286 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0016024 CDP-diacylglycerol biosynthetic process Biological Process
GO:0140042 lipid droplet formation Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005789 endoplasmic reticulum membrane Cellular Component
GO:0005811 lipid droplet Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0012505 endomembrane system Cellular Component
GO:0016020 membrane Cellular Component
GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity Molecular Function
KEGG gene cross-reference
ath:AT1G51260
ath:AT3G57650
zma:732844
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.318
Rank 1 · TkA07G369640 · TK1151
Peroxisome0.267
Rank 2 · TkA07G369640 · TK1151
Mitochondrion0.152
Rank 3 · TkA07G369640 · TK1151
Cytoplasm0.110
Rank 4 · TkA07G369640 · TK1151
Nucleus0.068
Rank 5 · TkA07G369640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01553Acyltransferase2-97 aa
PF24783FANCA_arcN88-114 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G369640PF01553Acyltransferase2971.6e-0525.4
TkA07G369640PF24783FANCA_arcN881140.3411.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8LG50Arabidopsis thalianasp|Q8LG50|LPAT2_ARATH 1-acyl-sn-glycerol-3-phosphate acyltransferase 283.800%Swiss-ProtHigh
Q9SYC8Arabidopsis thalianasp|Q9SYC8|LPAT3_ARATH 1-acyl-sn-glycerol-3-phosphate acyltransferase 369.700%Swiss-ProtHigh

JBrowse

View in Genome Browser