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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G367620
Reference: TK1151 Chr: Chr07 Coordinates: 92130038-92132125 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1881 bp · TkA07G367620|TK1151|cDNA

ATGTTTCCACTCAAATTCCAATTACGAAGCAAACCAATTACATCTCAACTCTGCAATCGTTCGAATTTTGCTCTCTTTTTCACGCACAGTACTGTCCGTGATGAAGAGAGGCAAGAACAGCAGCTTGAAGAAAGCATTACTAACAGGTCTTACTGGACCAGAAGAATCCACAAGCTTTGTGCAATTGATCGTAATGTCGATGAAGCAATGATCCTTGTTGACAAGCTTTGCGTCTATGGATACCGCCTCGATTCGCTCAA...

CDS

Download CDS FASTA

1881 bp · TkA07G367620|TK1151|CDS

ATGTTTCCACTCAAATTCCAATTACGAAGCAAACCAATTACATCTCAACTCTGCAATCGTTCGAATTTTGCTCTCTTTTTCACGCACAGTACTGTCCGTGATGAAGAGAGGCAAGAACAGCAGCTTGAAGAAAGCATTACTAACAGGTCTTACTGGACCAGAAGAATCCACAAGCTTTGTGCAATTGATCGTAATGTCGATGAAGCAATGATCCTTGTTGACAAGCTTTGCGTCTATGGATACCGCCTCGATTCGCTCAA...

Protein

Download Protein FASTA

626 aa · TkA07G367620|TK1151|PROTEIN

MFPLKFQLRSKPITSQLCNRSNFALFFTHSTVRDEERQEQQLEESITNRSYWTRRIHKLCAIDRNVDEAMILVDKLCVYGYRLDSLNLSSIIHALCDSNRFAQAHRRFLSSLSYSSGSGFTIPDERTCNVIIARLLDWGRNPQLTLRVVHRILAVKPHFVSSLTNFNRLIDQLCSFSCVHSAHILFFHMKSLGHLPNEVSYTTLINGYSRIGELGFAHKLLDEMSECGVKPNSLTYSVLIRGALHKRDIDLYTSLLQKLW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G367620
TK1151 IDTkA07G367620
OH-1004 IDLXL04_038941
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)31.000
Protein coverage (%)TK1151 11.182 / OH-1004 16.865
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G367620
LocationChr07:92130038-92132125 (+)
DescriptionSimilar to At1g80150: Pentatricopeptide repeat-containing protein At1g80150, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g18020 Pentatricopeptide repeat-containing protein At3g18020. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038941 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006396 RNA processing Biological Process
GO:0007005 mitochondrion organization Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005743 mitochondrial inner membrane Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005840 ribosome Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:1990904 ribonucleoprotein complex Cellular Component
GO:0000166 nucleotide binding Molecular Function
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G55890
ath:AT1G61870
ath:AT1G80150
ath:AT3G13160
ath:AT4G36680
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.798
Rank 1 · TkA07G367620 · TK1151
Plastid0.093
Rank 2 · TkA07G367620 · TK1151
Nucleus0.067
Rank 3 · TkA07G367620 · TK1151
Cytoplasm0.033
Rank 4 · TkA07G367620 · TK1151
Cell membrane0.011
Rank 5 · TkA07G367620 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23276TPR_2448-105 aa
PF17177PPR_long55-101 aa
PF13041PPR_256-97 aa
PF01535PPR59-78 aa
PF12854PPR_165-75 aa
PF29070MSC6_N83-104 aa
PF12921ATP1384-104 aa
PF12854PPR_188-104 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G367620PF23276TPR_24481054.6e-2072.6
TkA07G367620PF17177PPR_long551018.5e-1968.5
TkA07G367620PF13041PPR_256979.9e-74244.0
TkA07G367620PF01535PPR59781.7e-46154.0
TkA07G367620PF12854PPR_165751.6e-62207.6
TkA07G367620PF29070MSC6_N831041.3e-0731.8
TkA07G367620PF12921ATP13841044e-0730.6
TkA07G367620PF12854PPR_1881041.6e-62207.6
TkA07G367620PF01535PPR891041.7e-46154.0
TkA07G367620PF13041PPR_2901069.9e-74244.0
TkA07G367620PF13041PPR_21231349.9e-74244.0
TkA07G367620PF13041PPR_21662099.9e-74244.0
TkA07G367620PF12854PPR_11661771.6e-62207.6
TkA07G367620PF01535PPR1661931.7e-46154.0
TkA07G367620PF17177PPR_long1792508.5e-1968.5
TkA07G367620PF13812PPR_31882403.7e-31107.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LSK8Arabidopsis thalianasp|Q9LSK8|PP240_ARATH Pentatricopeptide repeat-containing protein At3g1802051.700%Swiss-ProtLow

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