TkA07G365100 | RubberDandelionOmics

Gene overview

TkA07G365100

Reference: TK1151 Chr: Chr07 Coordinates: 91459237-91460129 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

781 bp · TkA07G365100|TK1151|cDNA

TTCAATTTTGCAGAAAAAAACGAAATGGGTACACTCCACATTCCCTTACATCTAGGGTAAACAAGCACGTGAAATATTTAACGATCGATCGATCGACGAATCAAGAAATGAAAGCAACATTGCTACCTCAGTCTTGAGTCTTGACGCGTTTCTGGATCGCTCAATCCCAAAAGAATCGCTGCCTTCCGAATTTCAATCCTGCAATCTAGATCTACCATCTCCCCACAGCTGTGAATTTCCGTTTTCGTTTGCTATGTCGG...

CDS

Download CDS FASTA

528 bp · TkA07G365100|TK1151|CDS

ATGTCGGTGGAATCTGCCATTACCAACAACGTTAATGGTGGCTCCGTGTTCAGCAATGGCGAAGAGAAGAAACCGTTTAGGATCTTCGTAGGCTACGACACACGTGAAGATGTGGCTTACGAGGTGTGTTGGTACTTGATCCTGAAACGATCTTCGATCCCCGTTGAAGTTATCCCCGTTGAAGTTATCCCCATCAAACAATCTGAATTACGAGAGAAGAAATATTTTTGGCGCGAACGTAATGTACTCGAAAGCACTGA...

Protein

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176 aa · TkA07G365100|TK1151|PROTEIN

MSVESAITNNVNGGSVFSNGEEKKPFRIFVGYDTREDVAYEVCWYLILKRSSIPVEVIPVEVIPIKQSELREKKYFWRERNVLESTEFSFTRFLTPFLANYEGWAVFVDCDFLYLGDVKELHDLIDEKYAMMCVQHDYTPKETTKMDGAVQTAYPRKNWSSMVLYNCGHLKNKILT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G365100`
TK1151 ID	TkA07G365100
OH-1004 ID	LXL04_002061
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	93.200
Protein coverage (%)	TK1151 100.000 / OH-1004 65.517 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G365100

Location Chr07:91459237-91460129 (-)

Description Similar to CDI: Protein CDI

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g64980`	Probable nucleotide-diphospho-sugar transferase required for pollen germination and tube growth.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_002061 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009846 pollen germination Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016740 transferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G64980

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.420

Rank 1 · TkA07G365100 · TK1151

Nucleus0.209

Rank 2 · TkA07G365100 · TK1151

Golgi apparatus0.158

Rank 3 · TkA07G365100 · TK1151

Endoplasmic reticulum0.155

Rank 4 · TkA07G365100 · TK1151

Lysosome / Vacuole0.128

Rank 5 · TkA07G365100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01501Glyco_transf_879-142 aa

PF31159Rhodo_GlycoT104-139 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G365100	`PF01501`	Glyco_transf_8	79	142	0.07	13.4
TkA07G365100	`PF31159`	Rhodo_GlycoT	104	139	0.17	12.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9XIP8`	Arabidopsis thaliana	sp\|Q9XIP8\|CDI_ARATH Protein CDI	74.800%	Swiss-Prot	High

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