TkA07G354430 | RubberDandelionOmics

Gene overview

TkA07G354430

Reference: TK1151 Chr: Chr07 Coordinates: 88684696-88685844 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1113 bp · TkA07G354430|TK1151|cDNA

ATGACCTGGATGTCCCTTAGAAACGCGATCATCTTTAGAAAAATAGCGAGCTATCATTTTCAACCAAAAAATCACCGCCTTTCCATAAACATATCGCGCTTCATCCACCATGGAAGTAATTCATCTCCCGATTCGAAAAACGAACACACTTCTTCATATCTGCCGATATTTTCAAAAACTAGCGATCAACCCTATAATTACAAAATTGACATCGTCGATGACGACACCTGGCAAGTTTCAACAGGTTTTGCAGACGCCAT...

CDS

Download CDS FASTA

975 bp · TkA07G354430|TK1151|CDS

ATGACCTGGATGTCCCTTAGAAACGCGATCATCTTTAGAAAAATAGCGAGCTATCATTTTCAACCAAAAAATCACCGCCTTTCCATAAACATATCGCGCTTCATCCACCATGGAAGTAATTCATCTCCCGATTCGAAAAACGAACACACTTCTTCATATCTGCCGATATTTTCAAAAACTAGCGATCAACCCTATAATTACAAAATTGACATCGTCGATGACGACACCTGGCAAGTTTCAACAGGTTTTGCAGACGCCAT...

Protein

Download Protein FASTA

324 aa · TkA07G354430|TK1151|PROTEIN

MTWMSLRNAIIFRKIASYHFQPKNHRLSINISRFIHHGSNSSPDSKNEHTSSYLPIFSKTSDQPYNYKIDIVDDDTWQVSTGFADAMKAATPPPSQVPNTSHTQVINHAPRNQHDPDFDEIDDLRICGNLFYKLDKSSKEYEEYNFDFHRRKSSKKKSNSKEDEMRENKKKPNPRYDKVSKVEGSIMEHKQKQRVPTFNQLTAAYHEPFCLDIFISKASVRACIVHRATSKVVVVAHSISKDMKFDLKSTRNFEACDAVG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G354430`
TK1151 ID	TkA07G354430
OH-1004 ID	LXL04_029861
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	88.000
Protein coverage (%)	TK1151 99.074 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA07G354430`
Location	Chr07:88684696-88685844 (-)
Description	Similar to MRPL18: 39S ribosomal protein L18, mitochondrial
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_029861` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006412 translation Biological Process GO:0032543 mitochondrial translation Biological Process GO:0035928 rRNA import into mitochondrion Biological Process GO:0005615 extracellular space Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005743 mitochondrial inner membrane Cellular Component GO:0005761 mitochondrial ribosome Cellular Component GO:0005762 mitochondrial large ribosomal subunit Cellular Component GO:0022625 cytosolic large ribosomal subunit Cellular Component GO:0003735 structural constituent of ribosome Molecular Function GO:0008097 5S rRNA binding Molecular Function
KEGG gene cross-reference	bci:BCI_0344 bta:534352 cyc:PCC7424_3718 dtu:Dtur_0997 hsa:29074 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.869

Rank 1 · TkA07G354430 · TK1151

Nucleus0.074

Rank 2 · TkA07G354430 · TK1151

Cytoplasm0.056

Rank 3 · TkA07G354430 · TK1151

Plastid0.040

Rank 4 · TkA07G354430 · TK1151

Cell membrane0.012

Rank 5 · TkA07G354430 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10195Phospho_p8138-173 aa

PF00861Ribosomal_L18p209-300 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G354430	`PF10195`	Phospho_p8	138	173	0.54	11.6
TkA07G354430	`PF00861`	Ribosomal_L18p	209	300	3.6e-08	34.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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