TkA07G345880 | RubberDandelionOmics

Gene overview

TkA07G345880

Reference: TK1151 Chr: Chr07 Coordinates: 86449605-86459596 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1852 bp · TkA07G345880|TK1151|cDNA

ATTTCCAGGAACATTACCATTTACTTGACTAAGAAGTAAGAACCCCCAATATCATCTAATACAATTCTGTTTTTCTGCCTCGTTTCATTTTCATCGATAATCATGTTAGCTGCTACTCTCGATGGCAATAAAACATGCCGCCACTTTCACCTTCCTGAAATTCTTGCAGCAACCAATAACTTTAATGAATCGTTAGTAATTGGGCGAGGCGGGTTTGGAAAAGTTTACATGGGTAACGTCATTAATGGATCAAGTGTTGT...

CDS

Download CDS FASTA

951 bp · TkA07G345880|TK1151|CDS

ATGGATCAAGTGTTGTTCTTGCTGCCATTAAAAGGTTGGCTTCAACGACTCAAGATCTGCATAGGGGCTGCTCGTGGGCTAGACTACCTCCACACCGGTACCGGAATTGATGTCGGGGTTACACATCGTGATGTCAAGAGCTCAAATATTTTGTTACATAATAATTGGGCTGCTAAAATTTCAGACTTTGGGTTGTCCAAAGTAGGCCCAACGAACCAGCCAGTGACTTACGTGAACACACTTGTCAAAGGTACTTTTGG...

Protein

Download Protein FASTA

316 aa · TkA07G345880|TK1151|PROTEIN

MDQVLFLLPLKGWLQRLKICIGAARGLDYLHTGTGIDVGVTHRDVKSSNILLHNNWAAKISDFGLSKVGPTNQPVTYVNTLVKGTFGYLDPDYSFTEKLTRKSDVYALGVVLLEVLCRKPALDWSLAEEQQNLARWATESIKEGNLKHIIDPGIRGEISPKCLKKFVGVAERCLHNNPKQRPTMAEVVVSLESALTIQEKTNKSLQDAGKTIFGKMLDMFIFPSNGDNPEKCLHNQHPNMDEVTVNVGSVLSLRSMQIQV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G345880`
TK1151 ID	TkA07G345880
OH-1004 ID	LXL04_029769
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	87.500
Protein coverage (%)	TK1151 96.519 / OH-1004 73.046 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G345880

Location Chr07:86449605-86459596 (-)

Description Similar to FER: Receptor-like protein kinase FERONIA

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g28680`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release
`At3g51550`	May regulate MLO7 polarization in female gametophyte synergid cells to control pollen tube growth and male gamete delivery during fertilization.	FERONIA receptor-like kinase regulates RHO GTPase signaling of root hair development.2010 · DOI: 10.1073/pnas.1005366107
`At3g04690`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release
`At5g24010`	Probable receptor-like protein kinase At5g24010.	No verified direct reference in this release
`At5g59700`	Probable receptor-like protein kinase At5g59700.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029769 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009555 pollen development Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010038 response to metal ion Biological Process

GO:0010118 stomatal movement Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0030308 negative regulation of cell growth Biological Process

KEGG gene cross-reference

ath:AT3G04690

ath:AT3G51550

ath:AT4G39110

ath:AT5G28680

ath:AT5G39000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.437

Rank 1 · TkA07G345880 · TK1151

Cytoplasm0.312

Rank 2 · TkA07G345880 · TK1151

Nucleus0.239

Rank 3 · TkA07G345880 · TK1151

Endoplasmic reticulum0.100

Rank 4 · TkA07G345880 · TK1151

Golgi apparatus0.066

Rank 5 · TkA07G345880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714PK_Tyr_Ser-Thr15-190 aa

PF00069Pkinase22-188 aa

PF27141PglY_4th162-218 aa

PF07714PK_Tyr_Ser-Thr272-289 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G345880	`PF07714`	PK_Tyr_Ser-Thr	15	190	3.9e-23	82.8
TkA07G345880	`PF00069`	Pkinase	22	188	2.3e-24	86.9
TkA07G345880	`PF27141`	PglY_4th	162	218	0.37	11.0
TkA07G345880	`PF07714`	PK_Tyr_Ser-Thr	272	289	3.9e-23	82.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q3E8W4`	Arabidopsis thaliana	sp\|Q3E8W4\|ANX2_ARATH Receptor-like protein kinase ANXUR2	54.600%	Swiss-Prot	Medium
`Q9SCZ4`	Arabidopsis thaliana	sp\|Q9SCZ4\|FERON_ARATH Receptor-like protein kinase FERONIA	52.400%	Swiss-Prot	Medium
`Q9SR05`	Arabidopsis thaliana	sp\|Q9SR05\|ANX1_ARATH Receptor-like protein kinase ANXUR1	54.500%	Swiss-Prot	Medium
`Q9FLW0`	Arabidopsis thaliana	sp\|Q9FLW0\|Y5241_ARATH Probable receptor-like protein kinase At5g24010	49.800%	Swiss-Prot	Medium
`Q9FN92`	Arabidopsis thaliana	sp\|Q9FN92\|Y5597_ARATH Probable receptor-like protein kinase At5g59700	49.500%	Swiss-Prot	Medium

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