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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G338630
Reference: TK1151 Chr: Chr07 Coordinates: 84616229-84617027 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

732 bp · TkA07G338630|TK1151|cDNA

ATGGATTTTAGAGCTATAATGAACGATGTTGAGAAGACCAAAGGCACGAAAAAGAAGCAACATAATCCTTGTGTTTGGGAGTATTTTGCTGCTGATCGGGACAGGTTAATGTGGAAGAAAAAAGATCAAGTCTCGGGGCTGTTTTGGCAAAAGCATAATGGGCTGTACATCAAGAATTTCATGGCTGCAGTGGGGTGTTTTTGGAATTTCCAATTTGTCTCTCTCTGGCTGCAGTTAATTGGGTTAAAATGGGATTGTGT...

CDS

Download CDS FASTA

732 bp · TkA07G338630|TK1151|CDS

ATGGATTTTAGAGCTATAATGAACGATGTTGAGAAGACCAAAGGCACGAAAAAGAAGCAACATAATCCTTGTGTTTGGGAGTATTTTGCTGCTGATCGGGACAGGTTAATGTGGAAGAAAAAAGATCAAGTCTCGGGGCTGTTTTGGCAAAAGCATAATGGGCTGTACATCAAGAATTTCATGGCTGCAGTGGGGTGTTTTTGGAATTTCCAATTTGTCTCTCTCTGGCTGCAGTTAATTGGGTTAAAATGGGATTGTGT...

Protein

Download Protein FASTA

243 aa · TkA07G338630|TK1151|PROTEIN

MDFRAIMNDVEKTKGTKKKQHNPCVWEYFAADRDRLMWKKKDQVSGLFWQKHNGLYIKNFMAAVGCFWNFQFVSLWLQLIGLKWDCVWGWLLPILLLWLQPKKKQFFSSFWGYFWDIKKDKMQQGLFWFDWILLWDHCTNRWLFLFSWYGVIWQRVSFIGVCCYCWLRWGHPRRRKRFTSLSKSRFSMGFSNWICISLLSWTNGNDMFSLLLCNWRAVRDCFCNKFVLNVYKNSSKQCFAHIC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G338630
TK1151 IDTkA07G338630
OH-1004 IDLXL04_029708
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.600
Protein coverage (%)TK1151 100.000 / OH-1004 69.429
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G338630
LocationChr07:84616229-84617027 (-)
DescriptionSimilar to PAS1: Peptidyl-prolyl cis-trans isomerase PASTICCINO1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029708 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006457 protein folding Biological Process
GO:0009734 auxin-activated signaling pathway Biological Process
GO:0009735 response to cytokinin Biological Process
GO:0009736 cytokinin-activated signaling pathway Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0009880 embryonic pattern specification Biological Process
GO:0030010 establishment of cell polarity Biological Process
GO:0030154 cell differentiation Biological Process
GO:0042761 very long-chain fatty acid biosynthetic process Biological Process
GO:0048364 root development Biological Process
GO:0048527 lateral root development Biological Process
KEGG gene cross-reference
ath:AT3G54010
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.350
Rank 1 · TkA07G338630 · TK1151
Mitochondrion0.321
Rank 2 · TkA07G338630 · TK1151
Nucleus0.218
Rank 3 · TkA07G338630 · TK1151
Cell membrane0.075
Rank 4 · TkA07G338630 · TK1151
Extracellular0.065
Rank 5 · TkA07G338630 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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