TkA07G333930 | RubberDandelionOmics

Gene overview

TkA07G333930

Reference: TK1151 Chr: Chr07 Coordinates: 83461393-83463630 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1283 bp · TkA07G333930|TK1151|cDNA

AACAACTCCACTTCCTTTATTCATCCCCATTCGCTTTCTCCCCCGATGCCCACTGGAATTTGCCCCAATTTTCCATCAGTTTCTAATCAAACCACCGAAACCCATTAAATTCAATTCTTTTGGAAGTTGGGTGTCTGCTTATGGGATCTGGCTTTTCATCTTTTCTTCTTATGTGCAACAGCACCACCTCTGCTCCGGTGATACCGCCGGAGCCAGGTTTAGGTGATTTGCCGGAGAGTGTGGTGGGTTTTGTTCTTGTT...

CDS

Download CDS FASTA

849 bp · TkA07G333930|TK1151|CDS

ATGGGATCTGGCTTTTCATCTTTTCTTCTTATGTGCAACAGCACCACCTCTGCTCCGGTGATACCGCCGGAGCCAGGTTTAGGTGATTTGCCGGAGAGTGTGGTGGGTTTTGTTCTTGTTTACTTAAATCCACAAGAGATCTGTAAACTCGCATCACTCAACCGTGCTTTTCGTTATGCATCATCGGCTGAATTTGTCTGGGAATCGAAACTGCCGAAGAACTACGATTTGTTTATATCAAGGGTATTCGATAATAATAA...

Protein

Download Protein FASTA

282 aa · TkA07G333930|TK1151|PROTEIN

MGSGFSSFLLMCNSTTSAPVIPPEPGLGDLPESVVGFVLVYLNPQEICKLASLNRAFRYASSAEFVWESKLPKNYDLFISRVFDNNKFSSTLCKKEIYAKLSAPSPIDGGTKKVWLDKGTGKACVLISSKGLAITGIDDRRYWSWISTEESRFRSVAYLHQIWWFEVDGEVEFPFPSGTYTLLFRLQLGRSGRRFGRRVCHSDQVHGWDIKPVKFQLSTSDGQKAISQCCLTDPGKWNVYPVGDFVVEDSKVPMKIKFSM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G333930`
TK1151 ID	TkA07G333930
OH-1004 ID	LXL04_029655
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G333930

Location Chr07:83461393-83463630 (+)

Description Similar to PP2A13: F-box protein PP2-A13

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g61060`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At1g63090`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At1g12710`	F-box protein PP2-A12.	No verified direct reference in this release
`At3g53000`	F-box protein PP2-A15.	No verified direct reference in this release
`At5g52120`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029655 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009611 response to wounding Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:1900056 negative regulation of leaf senescence Biological Process

GO:0005634 nucleus Cellular Component

GO:0030246 carbohydrate binding Molecular Function

KEGG gene cross-reference

ath:AT1G12710

ath:AT1G63090

ath:AT3G53000

ath:AT3G61060

ath:AT5G52120

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.571

Rank 1 · TkA07G333930 · TK1151

Cytoplasm0.444

Rank 2 · TkA07G333930 · TK1151

Cell membrane0.090

Rank 3 · TkA07G333930 · TK1151

Endoplasmic reticulum0.081

Rank 4 · TkA07G333930 · TK1151

Lysosome / Vacuole0.037

Rank 5 · TkA07G333930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12937F-box-like28-68 aa

PF00646F-box29-62 aa

PF14299PP2122-281 aa

PF12937F-box-like152-163 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G333930	`PF12937`	F-box-like	28	68	0.00023	21.6
TkA07G333930	`PF00646`	F-box	29	62	0.0066	17.1
TkA07G333930	`PF14299`	PP2	122	281	6.6e-40	137.2
TkA07G333930	`PF12937`	F-box-like	152	163	0.00023	21.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LEX0`	Arabidopsis thaliana	sp\|Q9LEX0\|P2A13_ARATH F-box protein PP2-A13	62.300%	Swiss-Prot	High
`Q9CAN4`	Arabidopsis thaliana	sp\|Q9CAN4\|P2A11_ARATH F-box protein PP2-A11	57.600%	Swiss-Prot	High
`Q9LN77`	Arabidopsis thaliana	sp\|Q9LN77\|P2A12_ARATH F-box protein PP2-A12	61.500%	Swiss-Prot	High
`Q9LF92`	Arabidopsis thaliana	sp\|Q9LF92\|P2A15_ARATH F-box protein PP2-A15	55.200%	Swiss-Prot	High
`Q9FJ80`	Arabidopsis thaliana	sp\|Q9FJ80\|P2A14_ARATH F-box protein PP2-A14	51.400%	Swiss-Prot	High

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