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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G332430
Reference: TK1151 Chr: Chr07 Coordinates: 83105980-83110018 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2383 bp · TkA07G332430|TK1151|cDNA

CACCAACTAAACTCCGTCTTAGATAAACGAAACTCGAGTTACTTTAACCCTGTCTTTCACTTTGAACTCTCTCTTCGCACCCAGAAAACCTTACTTGTCGTAGGCATCGGAAATGACTATCGATGACTGGCCGGAGTGGCTCCCAGCTGACTGGATAATACAAATCAGAAAGATCGATGAACGGAAAGTCAAGTGTTTCATTGATCCTGAAGGACACAAGTTCTATTCGAAGCCTCAAGTGGATCGGCATCTTAAGACCA...

CDS

Download CDS FASTA

2013 bp · TkA07G332430|TK1151|CDS

ATGACTATCGATGACTGGCCGGAGTGGCTCCCAGCTGACTGGATAATACAAATCAGAAAGATCGATGAACGGAAAGTCAAGTGTTTCATTGATCCTGAAGGACACAAGTTCTATTCGAAGCCTCAAGTGGATCGGCATCTTAAGACCAGCAAAAACAGCACTGTCAGCGAGACGACTAACAATGCCGATGGCCCAAATCTGGACTTATCTCTAGATCCTGATGTTCTTGATACCCCAAATGAAGATCCTGAATCAACACC...

Protein

Download Protein FASTA

670 aa · TkA07G332430|TK1151|PROTEIN

MTIDDWPEWLPADWIIQIRKIDERKVKCFIDPEGHKFYSKPQVDRHLKTSKNSTVSETTNNADGPNLDLSLDPDVLDTPNEDPESTPQGHATRPRRSGSSGKKYKETEDFFSGQGSSSVPRSRGRKDAGTNWLPDGWTMEVKTKSSGKDYKVYIGPNGKKFFSKPMVLSYLAGTNNSPAGQKEGSVKLQISAPTEVDKDETRMAPDYEVVSSTPADGLPPGWIKEIRARPNGSGKKKDPYYLDPLSGYVFFSKLDALRYL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G332430
TK1151 IDTkA07G332430
OH-1004 IDLXL04_029637
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G332430
LocationChr07:83105980-83110018 (+)
DescriptionSimilar to MBD13: Methyl-CpG-binding domain-containing protein 13
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g52230 Probable transcriptional regulator. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029637 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0005634 nucleus Cellular Component
GO:0008327 methyl-CpG binding Molecular Function
KEGG gene cross-reference
ath:AT5G52230
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.973
Rank 1 · TkA07G332430 · TK1151
Cytoplasm0.069
Rank 2 · TkA07G332430 · TK1151
Cell membrane0.024
Rank 3 · TkA07G332430 · TK1151
Endoplasmic reticulum0.015
Rank 4 · TkA07G332430 · TK1151
Plastid0.009
Rank 5 · TkA07G332430 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01429MBD9-52 aa
PF22970DUF702813-47 aa
PF01429MBD92-102 aa
PF18300DUF560499-106 aa
PF01429MBD128-176 aa
PF20625WW_USP8133-138 aa
PF22970DUF7028136-163 aa
PF18300DUF5604136-163 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G332430PF01429MBD9524.5e-32110.2
TkA07G332430PF22970DUF702813470.0001822.1
TkA07G332430PF01429MBD921024.5e-32110.2
TkA07G332430PF18300DUF5604991066.17.6
TkA07G332430PF01429MBD1281764.5e-32110.2
TkA07G332430PF20625WW_USP81331387.87.2
TkA07G332430PF22970DUF70281361630.0001822.1
TkA07G332430PF18300DUF56041361636.17.6
TkA07G332430PF20625WW_USP82172247.87.2
TkA07G332430PF01429MBD2182634.5e-32110.2
TkA07G332430PF22970DUF70282312580.0001822.1
TkA07G332430PF18300DUF56043343816.17.6
TkA07G332430PF01429MBD3463964.5e-32110.2
TkA07G332430PF20625WW_USP83503557.87.2
TkA07G332430PF22970DUF70283533900.0001822.1
TkA07G332430PF20625WW_USP84554627.87.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LTJ8Arabidopsis thalianasp|Q9LTJ8|MBD13_ARATH Methyl-CpG-binding domain-containing protein 1344.400%Swiss-ProtLow

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