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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G330640
Reference: TK1151 Chr: Chr07 Coordinates: 82665310-82668805 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1929 bp · TkA07G330640|TK1151|cDNA

CTTCCTTCTCCGTTCTCGCGAGTCGCGACTGCTTCATCCTTCGCCCTTCACTCCTTCAGCCCTACTTCGTCGCACCACTCCCGGCGTTCACTCCGGCGATTGTCTGTAACTCGACCACCGCAGCAGCTCTCGATTACACTGTAAAGCCTTGTCTTATTTAAAGGTCTGCAAAAACATCAGAAACCTTGAGCAAGTCCATGTCCAAATCATTCGCCACGGCTCCGAACAAGACCATTTCCTCATATCACAGTTCATCTCTG...

CDS

Download CDS FASTA

1362 bp · TkA07G330640|TK1151|CDS

ATGAAACAAAACAGTTATGTTGTTGCAGACAAGTATACGTTCCCGTCATTGGTCAAAACTTGTTCTGGTGCTTTGGCATTGAGGGAAGGAGAGATTATTCATGGGTTGATAGTTAAGTATGGTACGGAAGCTGATGTGTATGTGGGGTCTAGTTTGATTGATTTGTATGGGAAATGTGGTGAGATGGGAAATGCTCGCAAGGTGTTTGATGGAATGCTTGTGAGAAACGAGGTTACTTGGACTAGTATGATAGTTGGGTA...

Protein

Download Protein FASTA

453 aa · TkA07G330640|TK1151|PROTEIN

MKQNSYVVADKYTFPSLVKTCSGALALREGEIIHGLIVKYGTEADVYVGSSLIDLYGKCGEMGNARKVFDGMLVRNEVTWTSMIVGYTTNGNYVDAKKLFDEMPQRNQASWNAMMNGFVKSGDLVSARVLFDEMRDKNLVSFTTMIDGYAKSGDMESARCLFDQSPEKDIVCWSTMIAGYAQNGQPKEATKIFMEMRSKNVKPDEYVMASMMSACSQTGDWELAHWVDNYMRESNIDLTQNHVAAALVNMNAKCGNLERA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G330640
TK1151 IDTkA07G330640
OH-1004 IDLXL04_013788
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)39.200
Protein coverage (%)TK1151 96.909 / OH-1004 57.186
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G330640
LocationChr07:82665310-82668805 (+)
DescriptionSimilar to PCMP-H17: Pentatricopeptide repeat-containing protein At5g44230
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g37570 Putative pentatricopeptide repeat-containing protein At5g37570. No verified direct reference in this release
At3g49142 Putative pentatricopeptide repeat-containing protein At3g49142. No verified direct reference in this release
At3g29230 Pentatricopeptide repeat-containing protein At3g29230. No verified direct reference in this release
At2g22410 Pentatricopeptide repeat-containing protein At2g22410, mitochondrial. No verified direct reference in this release
At2g13600 Pentatricopeptide repeat-containing protein At2g13600. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013788 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0016554 cytidine to uridine editing Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G29760
ath:AT3G49142
ath:AT5G06540
ath:AT5G44230
ath:AT5G66520
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.614
Rank 1 · TkA07G330640 · TK1151
Plastid0.222
Rank 2 · TkA07G330640 · TK1151
Nucleus0.057
Rank 3 · TkA07G330640 · TK1151
Cytoplasm0.035
Rank 4 · TkA07G330640 · TK1151
Peroxisome0.007
Rank 5 · TkA07G330640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_27-21 aa
PF13812PPR_340-72 aa
PF01535PPR50-75 aa
PF13041PPR_250-75 aa
PF12854PPR_150-72 aa
PF13428TPR_1452-75 aa
PF12854PPR_173-103 aa
PF24760TPR_IF140_C74-103 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G330640PF13041PPR_27211.2e-55186.1
TkA07G330640PF13812PPR_340725.6e-2071.9
TkA07G330640PF01535PPR50754.5e-65212.2
TkA07G330640PF13041PPR_250751.2e-55186.1
TkA07G330640PF12854PPR_150726.3e-37125.7
TkA07G330640PF13428TPR_1452753.8e-0833.9
TkA07G330640PF12854PPR_1731036.3e-37125.7
TkA07G330640PF24760TPR_IF140_C741030.01116.8
TkA07G330640PF13041PPR_2761071.2e-55186.1
TkA07G330640PF29070MSC6_N761584.3e-0833.4
TkA07G330640PF13812PPR_3771065.6e-2071.9
TkA07G330640PF01535PPR781064.5e-65212.2
TkA07G330640PF13428TPR_14801073.8e-0833.9
TkA07G330640PF24603TPR_30831320.002918.7
TkA07G330640PF14559TPR_19891091.1e-0526.4
TkA07G330640PF20431E_motif911041.4e-2177.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FHR3Arabidopsis thalianasp|Q9FHR3|PP403_ARATH Putative pentatricopeptide repeat-containing protein At5g3757058.500%Swiss-ProtHigh
P0C899Arabidopsis thalianasp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g4914231.800%Swiss-ProtMedium
Q9LS72Arabidopsis thalianasp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g2923050.900%Swiss-ProtHigh
Q9SJZ3Arabidopsis thalianasp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial33.600%Swiss-ProtMedium
Q9SIT7Arabidopsis thalianasp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g1360030.300%Swiss-ProtMedium

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