TkA07G327530 | RubberDandelionOmics

Gene overview

TkA07G327530

Reference: TK1151 Chr: Chr07 Coordinates: 81906693-81909714 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

939 bp · TkA07G327530|TK1151|cDNA

ATGTCTTCTGATTTGTTTGAATTTGAGGAGTGTTTCTTCACTGATCCTTTCTCTCCACTAAATGATTGTTCCTCCATTGACATCCTCAAAGCTTTTCAAGAAAATACTTACAATTTTAACCCTTCGTCATCAACCTTGACGAATGAAAATATCGACATCCCATTTAATGAAATTGACCAAATTGCCCTCACCAACAAACCCACCATCGTGTCTTCTTCCCCACCAAGCCGCCAGCTTGGAAGTCTCTCTCTTTACCAGAT...

CDS

Download CDS FASTA

939 bp · TkA07G327530|TK1151|CDS

ATGTCTTCTGATTTGTTTGAATTTGAGGAGTGTTTCTTCACTGATCCTTTCTCTCCACTAAATGATTGTTCCTCCATTGACATCCTCAAAGCTTTTCAAGAAAATACTTACAATTTTAACCCTTCGTCATCAACCTTGACGAATGAAAATATCGACATCCCATTTAATGAAATTGACCAAATTGCCCTCACCAACAAACCCACCATCGTGTCTTCTTCCCCACCAAGCCGCCAGCTTGGAAGTCTCTCTCTTTACCAGAT...

Protein

Download Protein FASTA

312 aa · TkA07G327530|TK1151|PROTEIN

MSSDLFEFEECFFTDPFSPLNDCSSIDILKAFQENTYNFNPSSSTLTNENIDIPFNEIDQIALTNKPTIVSSSPPSRQLGSLSLYQMGNSVNSLESCPPEVKIEKSQLPFYDYSYRGGENVMKMMQRSYSSISFDRRPNGVIFQPKFDSLIESSNLHSLSLTSPDHGFTSNHMRRVCSTGDLQSLKPNQRGEKLSSSPLATEGSFVEEVNFKVGRYSPEERKERILKYKAKRTQRNFNKTIKYACRKTLADNRPRIRGRF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G327530`
TK1151 ID	TkA07G327530
OH-1004 ID	LXL04_029596
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	95.900
Protein coverage (%)	TK1151 91.667 / OH-1004 86.550 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G327530

Location Chr07:81906693-81909714 (+)

Description Similar to COL1: Zinc finger protein CONSTANS-LIKE 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g24790`	Zinc finger protein CONSTANS-LIKE 3.	No verified direct reference in this release
`At5g57660`	Zinc finger protein CONSTANS-LIKE 5.	No verified direct reference in this release
`At5g24930`	Zinc finger protein CONSTANS-LIKE 4.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029596 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0009908 flower development Biological Process

GO:0009909 regulation of flower development Biological Process

GO:0010018 far-red light signaling pathway Biological Process

GO:0010099 regulation of photomorphogenesis Biological Process

GO:0010161 red light signaling pathway Biological Process

GO:0010218 response to far red light Biological Process

GO:0030154 cell differentiation Biological Process

GO:0048577 negative regulation of short-day photoperiodism, flowering Biological Process

GO:2000028 regulation of photoperiodism, flowering Biological Process

KEGG gene cross-reference

ath:AT2G24790

ath:AT3G02380

ath:AT5G15840

ath:AT5G15850

dosa:Os09g0240200

osa:4346474

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.649

Rank 1 · TkA07G327530 · TK1151

Cytoplasm0.423

Rank 2 · TkA07G327530 · TK1151

Cell membrane0.043

Rank 3 · TkA07G327530 · TK1151

Mitochondrion0.036

Rank 4 · TkA07G327530 · TK1151

Endoplasmic reticulum0.027

Rank 5 · TkA07G327530 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06203CCT221-263 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G327530	`PF06203`	CCT	221	263	2.6e-18	66.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SK53`	Arabidopsis thaliana	sp\|Q9SK53\|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3	53.800%	Swiss-Prot	Low
`Q9FHH8`	Arabidopsis thaliana	sp\|Q9FHH8\|COL5_ARATH Zinc finger protein CONSTANS-LIKE 5	47.500%	Swiss-Prot	Low
`Q940T9`	Arabidopsis thaliana	sp\|Q940T9\|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4	50.000%	Swiss-Prot	Low

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