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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G327130
Reference: TK1151 Chr: Chr07 Coordinates: 81837860-81838357 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

498 bp · TkA07G327130|TK1151|cDNA

ATGGGTTTTCCGGTGGGTTACACAGATCTCTTCCTCCCACAACTCATCGTCCATATCTTAACCCTTCTAGGTGTCATCCATAGCCTCATTTCTTCCCTTTTCTCCTTTATCGGACTCAAAGATATATTTCATCCCATCTCTCAATCCAACGCGCCACAATCTGAGCTGCCAACTCAGTTCCAGACGTTATCCGCCGTCCTCCTCCGTGAACTCCTTCCTGTCGTCAAGTTCACAGAGCTCGTAGACCCTCCCGAGACCTG...

CDS

Download CDS FASTA

498 bp · TkA07G327130|TK1151|CDS

ATGGGTTTTCCGGTGGGTTACACAGATCTCTTCCTCCCACAACTCATCGTCCATATCTTAACCCTTCTAGGTGTCATCCATAGCCTCATTTCTTCCCTTTTCTCCTTTATCGGACTCAAAGATATATTTCATCCCATCTCTCAATCCAACGCGCCACAATCTGAGCTGCCAACTCAGTTCCAGACGTTATCCGCCGTCCTCCTCCGTGAACTCCTTCCTGTCGTCAAGTTCACAGAGCTCGTAGACCCTCCCGAGACCTG...

Protein

Download Protein FASTA

165 aa · TkA07G327130|TK1151|PROTEIN

MGFPVGYTDLFLPQLIVHILTLLGVIHSLISSLFSFIGLKDIFHPISQSNAPQSELPTQFQTLSAVLLRELLPVVKFTELVDPPETCVVCLYEFDAGDEIRVLTNCRHVFHRCCVDRWMDHDRKTCPLCRTPFISEDLQDSFNERLWAASGFTDYYGESSLAGTS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G327130
TK1151 IDTkA07G327130
OH-1004 IDLXL04_029594
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.400
Protein coverage (%)TK1151 96.970 / OH-1004 99.379
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G327130
LocationChr07:81837860-81838357 (+)
DescriptionSimilar to BRH1: Brassinosteroid-responsive RING protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g61460 May be involved in the brassinosteroids (BRs) signaling pathway and regulate the growth and development of rosette leaves.
Characterisation of BRH1, a brassinosteroid-responsive RING-H2 gene from Arabidopsis thaliana.2002 · DOI: 10.1007/s00425-001-0723-z
Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.2018 · DOI: 10.1007/s11427-017-9133-8
At4g11360 Possesses E3 ubiquitin-protein ligase activity when associated with the E2 enzyme UBC8 in vitro. No verified direct reference in this release
At3g18773 RING-H2 finger protein ATL77. No verified direct reference in this release
At2g01150 E3 ubiquitin-protein ligase involved in the positive regulation of abscisic acid (ABA) signaling and responses to salt and osmotic stresses during seed germination and early seedling development.
The Arabidopsis RING finger E3 ligase RHA2b acts additively with RHA2a in regulating abscisic acid signaling and drought response.2011 · DOI: 10.1104/pp.111.176214
At1g15100 E3 ubiquitin-protein ligase involved in the positive regulation of abscisic acid (ABA) signaling and responses to salt and osmotic stresses during seed germination and early seedling development.
The Arabidopsis RING finger E3 ligase RHA2a is a novel positive regulator of abscisic acid signaling during seed germination and early seedling development.2009 · DOI: 10.1104/pp.109.135269
The Arabidopsis RING finger E3 ligase RHA2b acts additively with RHA2a in regulating abscisic acid signaling and drought response.2011 · DOI: 10.1104/pp.111.176214

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029594 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0009741 response to brassinosteroid Biological Process
GO:0009742 brassinosteroid mediated signaling pathway Biological Process
GO:0010200 response to chitin Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:1901371 regulation of leaf morphogenesis Biological Process
GO:1905421 regulation of plant organ morphogenesis Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005789 endoplasmic reticulum membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
KEGG gene cross-reference
ath:AT3G18773
ath:AT3G61460
ath:AT4G11360
ath:AT4G11370
spo:2541304
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.328
Rank 1 · TkA07G327130 · TK1151
Cytoplasm0.261
Rank 2 · TkA07G327130 · TK1151
Nucleus0.209
Rank 3 · TkA07G327130 · TK1151
Golgi apparatus0.205
Rank 4 · TkA07G327130 · TK1151
Lysosome / Vacuole0.172
Rank 5 · TkA07G327130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23555zf-RING_Vps4143-51 aa
PF12678zf-rbx185-130 aa
PF13920zf-C3HC4_385-133 aa
PF12660zf-TFIIIC85-140 aa
PF04423Rad50_zn_hook85-98 aa
PF13639zf-RING_286-130 aa
PF12861zf-ANAPC1186-134 aa
PF17120zf-RING_1686-127 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G327130PF23555zf-RING_Vps4143512.78.4
TkA07G327130PF12678zf-rbx1851302.7e-0937.8
TkA07G327130PF13920zf-C3HC4_3851330.0001522.2
TkA07G327130PF12660zf-TFIIIC851400.01516.0
TkA07G327130PF04423Rad50_zn_hook85980.1412.8
TkA07G327130PF13639zf-RING_2861304.9e-1349.8
TkA07G327130PF12861zf-ANAPC11861344.4e-0627.4
TkA07G327130PF17120zf-RING_16861270.0008519.6
TkA07G327130PF14446Prok-RING_1861170.003218.3
TkA07G327130PF04641Rtf2861370.2211.6
TkA07G327130PF17121zf-C3HC4_5861291.19.9
TkA07G327130PF17123zf-RING_11871159.2e-0832.4
TkA07G327130PF13923zf-C3HC4_2871291.4e-0628.7
TkA07G327130PF14634zf-RING_5871312.1e-0628.3
TkA07G327130PF00097zf-C3HC4871291e-0526.0
TkA07G327130PF13445zf-RING_UBOX871271.4e-0525.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9XF92Arabidopsis thalianasp|Q9XF92|BRH1_ARATH Brassinosteroid-responsive RING protein 154.300%Swiss-ProtHigh
Q9SUS5Arabidopsis thalianasp|Q9SUS5|RHA1B_ARATH E3 ubiquitin-protein ligase RHA1B35.900%Swiss-ProtMedium
Q9LS99Arabidopsis thalianasp|Q9LS99|ATL77_ARATH RING-H2 finger protein ATL7743.800%Swiss-ProtLow
Q9ZU51Arabidopsis thalianasp|Q9ZU51|RHA2B_ARATH E3 ubiquitin-protein ligase RHA2B45.300%Swiss-ProtLow
Q9ZT50Arabidopsis thalianasp|Q9ZT50|RHA2A_ARATH E3 ubiquitin-protein ligase RHA2A49.000%Swiss-ProtLow

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