TkA07G322260 | RubberDandelionOmics

Gene overview

TkA07G322260

Reference: TK1151 Chr: Chr07 Coordinates: 80683399-80684061 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

663 bp · TkA07G322260|TK1151|cDNA

ATGTCTGAGAATCTGCATAGCCCTCGATTTATGTGTTATTTGTCCATTCCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTATTCCTGGGATGGGAGGGAGTAGGTCTTGCTTCATATTTGTTAATTAATTTCTGGTTTACACAGCTTCAGGCAGATAAAGCAGCTATAAAAGCTATGCTTGTCAATCGAGTAGGTGATTTTGGATTAACTCCTGGGATTTTGGGTTGTTTTACTCTCTTTCA...

CDS

Download CDS FASTA

663 bp · TkA07G322260|TK1151|CDS

ATGTCTGAGAATCTGCATAGCCCTCGATTTATGTGTTATTTGTCCATTCCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTATTCCTGGGATGGGAGGGAGTAGGTCTTGCTTCATATTTGTTAATTAATTTCTGGTTTACACAGCTTCAGGCAGATAAAGCAGCTATAAAAGCTATGCTTGTCAATCGAGTAGGTGATTTTGGATTAACTCCTGGGATTTTGGGTTGTTTTACTCTCTTTCA...

Protein

Download Protein FASTA

220 aa · TkA07G322260|TK1151|PROTEIN

MSENLHSPRFMCYLSIPTFFMPMLVTGDNSLQLFLGWEGVGLASYLLINFWFTQLQADKAAIKAMLVNRVGDFGLTPGILGCFTLFQTVDFSTIFACASAPRNSWISRNMRLNAITLICILLLIGAAGKSAQIGSHTWSPDAMEGPTPVSALIHAATMVTAGVFMIARFSPLFEYPPMALIVITFAGAMMSFLAATTGILQNDLKRVIAYSTCSQLGSSI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G322260`
TK1151 ID	TkA07G322260
OH-1004 ID	LXL04_029489
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.500
Protein coverage (%)	TK1151 88.636 / OH-1004 52.279 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G322260

Location Chr07:80683399-80684061 (-)

Description Similar to ND5: NADH-ubiquinone oxidoreductase chain 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`UniProt: P29388`	Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_029489 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0015990 electron transport coupled proton transport Biological Process

GO:0042773 ATP synthesis coupled electron transport Biological Process

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0045271 respiratory chain complex I Cellular Component

GO:0003954 NADH dehydrogenase activity Molecular Function

GO:0008137 NADH dehydrogenase (ubiquinone) activity Molecular Function

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.771

Rank 1 · TkA07G322260 · TK1151

Cytoplasm0.065

Rank 2 · TkA07G322260 · TK1151

Plastid0.057

Rank 3 · TkA07G322260 · TK1151

Endoplasmic reticulum0.029

Rank 4 · TkA07G322260 · TK1151

Cell membrane0.029

Rank 5 · TkA07G322260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00361Proton_antipo_M29-217 aa

PF09754PAC233-60 aa

PF13160DUF399571-132 aa

PF27291AF_1457104-128 aa

PF09754PAC2124-192 aa

PF13160DUF3995140-194 aa

PF27291AF_1457154-195 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G322260	`PF00361`	Proton_antipo_M	29	217	8.6e-49	167.0
TkA07G322260	`PF09754`	PAC2	33	60	0.044	14.3
TkA07G322260	`PF13160`	DUF3995	71	132	1.5	10.0
TkA07G322260	`PF27291`	AF_1457	104	128	0.4	11.7
TkA07G322260	`PF09754`	PAC2	124	192	0.044	14.3
TkA07G322260	`PF13160`	DUF3995	140	194	1.5	10.0
TkA07G322260	`PF27291`	AF_1457	154	195	0.4	11.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P29388`	Arabidopsis thaliana	sp\|P29388\|NU5M_ARATH NADH-ubiquinone oxidoreductase chain 5	89.500%	Swiss-Prot	High

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