TkA07G314900 | RubberDandelionOmics

Gene overview

TkA07G314900

Reference: TK1151 Chr: Chr07 Coordinates: 78989142-78991332 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1029 bp · TkA07G314900|TK1151|cDNA

TTAGGCTACGCGGAGTGGGACGACGACGAGCTCGCTAAGAGCTTAGCGAGGAGCTGCTACACCGCCCCTACAAATTCTGAAGAAGAGGCATTGATCGATTACGCTGCAGAGGTAGCTGTTAATTTGGCTAATACGTTATCACAACAAGTCGAAGGAGAAGGGAGCAATGCTATTCGAAGAAATAGACGATATATCAAAAGGGGACGAGATCAATGGCAAAATCCTCTGATGAAAGATTATTTTAACGATAATGCTATCTA...

CDS

Download CDS FASTA

1029 bp · TkA07G314900|TK1151|CDS

TTAGGCTACGCGGAGTGGGACGACGACGAGCTCGCTAAGAGCTTAGCGAGGAGCTGCTACACCGCCCCTACAAATTCTGAAGAAGAGGCATTGATCGATTACGCTGCAGAGGTAGCTGTTAATTTGGCTAATACGTTATCACAACAAGTCGAAGGAGAAGGGAGCAATGCTATTCGAAGAAATAGACGATATATCAAAAGGGGACGAGATCAATGGCAAAATCCTCTGATGAAAGATTATTTTAACGATAATGCTATCTA...

Protein

Download Protein FASTA

342 aa · TkA07G314900|TK1151|PROTEIN

LGYAEWDDDELAKSLARSCYTAPTNSEEEALIDYAAEVAVNLANTLSQQVEGEGSNAIRRNRRYIKRGRDQWQNPLMKDYFNDNAIYQVYFRRRFRRHKHLFFRIVEGVCSVCDSFTQRPDARGTLGFTTIQKCYAALRMLAYGTHPDSLDENFRMAERTARDTLIHFCDSILQLYAPRYLRYPTPNDVKQLYEHHANVHGLPGMLGSLDCMHWKWNMCNNHLHSQYTKGLYNYPTVVLEAVASQDMWFWHANFGSPDGI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G314900`
TK1151 ID	TkA07G314900
OH-1004 ID	LXL04_000992
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	89.000
Protein coverage (%)	TK1151 52.924 / OH-1004 22.390 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA07G314900`
Location	Chr07:78989142-78991332 (-)
Description	Similar to GBP7: Guanylate-binding protein 7
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_000992` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0001818 negative regulation of cytokine production Biological Process GO:0002218 activation of innate immune response Biological Process GO:0006605 protein targeting Biological Process GO:0009617 response to bacterium Biological Process GO:0032480 negative regulation of type I interferon production Biological Process GO:0032731 positive regulation of interleukin-1 beta production Biological Process GO:0032741 positive regulation of interleukin-18 production Biological Process GO:0034067 protein localization to Golgi apparatus Biological Process GO:0034345 negative regulation of type III interferon production Biological Process GO:0035458 cellular response to interferon-beta Biological Process GO:0042742 defense response to bacterium Biological Process GO:0042832 defense response to protozoan Biological Process
KEGG gene cross-reference	hsa:115361 hsa:115362 hsa:388646 mmu:229900 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.924

Rank 1 · TkA07G314900 · TK1151

Cytoplasm0.162

Rank 2 · TkA07G314900 · TK1151

Mitochondrion0.021

Rank 3 · TkA07G314900 · TK1151

Cell membrane0.017

Rank 4 · TkA07G314900 · TK1151

Extracellular0.011

Rank 5 · TkA07G314900 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00424REV50-73 aa

PF28509DUF841874-109 aa

PF00424REV92-120 aa

PF04827Plant_tran179-257 aa

PF13359DDE_Tnp_4209-253 aa

PF04827Plant_tran258-340 aa

PF13359DDE_Tnp_4277-331 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G314900	`PF00424`	REV	50	73	0.089	13.5
TkA07G314900	`PF28509`	DUF8418	74	109	2.1e-12	47.3
TkA07G314900	`PF00424`	REV	92	120	0.089	13.5
TkA07G314900	`PF04827`	Plant_tran	179	257	1.3e-47	162.8
TkA07G314900	`PF13359`	DDE_Tnp_4	209	253	3.7e-06	27.4
TkA07G314900	`PF04827`	Plant_tran	258	340	1.3e-47	162.8
TkA07G314900	`PF13359`	DDE_Tnp_4	277	331	3.7e-06	27.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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