TkA07G313430 | RubberDandelionOmics

Gene overview

TkA07G313430

Reference: TK1151 Chr: Chr07 Coordinates: 78627017-78628046 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

915 bp · TkA07G313430|TK1151|cDNA

AAGATCAAGGGTCAATTTGTAATTTTACTTCGCTCTGTCCTCCTTATATTCACGAGAAATCCTTCTCCTCTTCCTAAAGTCTCTCTCTCACTAATCTCGAAATCCAAGATACATCGAGAGATGGCAATTCTTGGAAGGAAAATGTGCCATCGATTATCGTCCGCAGTTCTGTTCTTCGTTTTGATTCAAGCAAATGTGTTCGCGTATCAATACCAAGTCGGAAATCTTCAAGCTTGGAACGTACCCACTTCGACAGATCC...

CDS

Download CDS FASTA

648 bp · TkA07G313430|TK1151|CDS

AAGATCAAGGGTCAATTTGTAATTTTACTTCGCTCTGTCCTCCTTATATTCACGAGAAATCCTTCTCCTCTTCCTAAAGTCTCTCTCTCACTAATCTCGAAATCCAAGATACATCGAGAGATGGCAATTCTTGGAAGGAAAATGTGCCATCGATTATCGTCCGCAGTTCTGTTCTTCGTTTTGATTCAAGCAAATGTGTTCGCGTATCAATACCAAGTCGGAAATCTTCAAGCTTGGAACGTACCCACTTCGACAGATCC...

Protein

Download Protein FASTA

215 aa · TkA07G313430|TK1151|PROTEIN

KIKGQFVILLRSVLLIFTRNPSPLPKVSLSLISKSKIHREMAILGRKMCHRLSSAVLFFVLIQANVFAYQYQVGNLQAWNVPTSTDPKIYTNWPKKLSFRIGDSLLFLYPPSEDSVIQVTKESYDTCNLKNPILYMNNGNSLFNITSPGVFYFTSGVSGHCEKSQKIQISVFAADGSLPLPPSSAPAEHLLILHLPTRQCLAEYRPDRRSRRLRR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G313430`
TK1151 ID	TkA07G313430
OH-1004 ID	LXL04_029466
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 67.907 / OH-1004 73.737 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G313430

Location Chr07:78627017-78628046 (+)

Description Similar to At2g25060: Early nodulin-like protein 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g64640`	May act as a carbohydrate transporter.	No verified direct reference in this release
`At1g48940`	May act as a carbohydrate transporter.	No verified direct reference in this release
`At3g20570`	May act as a carbohydrate transporter.	An early nodulin-like protein accumulates in the sieve element plasma membrane of Arabidopsis.2007 · DOI: 10.1104/pp.106.092296
`At2g25060`	May act as a carbohydrate transporter.	No verified direct reference in this release
`At3g18590`	May act as a carbohydrate transporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029466 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0016020 membrane Cellular Component

GO:0098552 side of membrane Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0009055 electron transfer activity Molecular Function

KEGG gene cross-reference

ath:AT1G48940

ath:AT1G64640

ath:AT1G79800

ath:AT2G25060

ath:AT3G20570

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.339

Rank 1 · TkA07G313430 · TK1151

Endoplasmic reticulum0.208

Rank 2 · TkA07G313430 · TK1151

Cell membrane0.205

Rank 3 · TkA07G313430 · TK1151

Cytoplasm0.123

Rank 4 · TkA07G313430 · TK1151

Lysosome / Vacuole0.088

Rank 5 · TkA07G313430 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02298Cu_bind_like79-164 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G313430	`PF02298`	Cu_bind_like	79	164	4.8e-20	72.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q6NLD7`	Arabidopsis thaliana	sp\|Q6NLD7\|ENL08_ARATH Early nodulin-like protein 8	57.100%	Swiss-Prot	Medium
`Q4PSZ8`	Arabidopsis thaliana	sp\|Q4PSZ8\|ENL06_ARATH Early nodulin-like protein 6	37.000%	Swiss-Prot	Medium
`Q9LJU1`	Arabidopsis thaliana	sp\|Q9LJU1\|ENL09_ARATH Early nodulin-like protein 9	35.600%	Swiss-Prot	Medium
`Q9SK27`	Arabidopsis thaliana	sp\|Q9SK27\|ENL14_ARATH Early nodulin-like protein 14	35.600%	Swiss-Prot	Medium
`Q9LII0`	Arabidopsis thaliana	sp\|Q9LII0\|ENL05_ARATH Early nodulin-like protein 5	40.700%	Swiss-Prot	Medium

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