TkA07G305830 | RubberDandelionOmics

Gene overview

TkA07G305830

Reference: TK1151 Chr: Chr07 Coordinates: 76761222-76762378 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

735 bp · TkA07G305830|TK1151|cDNA

CCGACATCCTACTCTAAAGTGGCCCAGAGGGATGATTTGGTTTATATCACAATTGATCTGCCAGATGCTAAAAACGTGAACCTCAAACTCACCCCAGAGGGAAAGTTCTACTTCTCTGCAACAAGTGGACCCGATAGTACACCTTATGAAATTGATATCAACCTTTATGACAACGTCAATGTGGACGAGAGCAAGGCTAATGTTGGGTCAAGAAATGTTGTGTACATTGTGAAGAAGGAAGAGAGTAAATGGTGGAACAG...

CDS

Download CDS FASTA

438 bp · TkA07G305830|TK1151|CDS

CCGACATCCTACTCTAAAGTGGCCCAGAGGGATGATTTGGTTTATATCACAATTGATCTGCCAGATGCTAAAAACGTGAACCTCAAACTCACCCCAGAGGGAAAGTTCTACTTCTCTGCAACAAGTGGACCCGATAGTACACCTTATGAAATTGATATCAACCTTTATGACAACGTCAATGTGGACGAGAGCAAGGCTAATGTTGGGTCAAGAAATGTTGTGTACATTGTGAAGAAGGAAGAGAGTAAATGGTGGAACAG...

Protein

Download Protein FASTA

145 aa · TkA07G305830|TK1151|PROTEIN

PTSYSKVAQRDDLVYITIDLPDAKNVNLKLTPEGKFYFSATSGPDSTPYEIDINLYDNVNVDESKANVGSRNVVYIVKKEESKWWNRLLKQEGRTPAFVKVDWNKWVDEDEQDEKAGPDMDYDDVNFSSLNLGGGGGEDFDADDE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G305830`
TK1151 ID	TkA07G305830
OH-1004 ID	LXL04_031205
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	97.800
Protein coverage (%)	TK1151 93.793 / OH-1004 58.369 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G305830

Location Chr07:76761222-76762378 (-)

Description Similar to P23-1: Co-chaperone protein p23-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g03773`	Acts as a co-chaperone for HSP90.	Characterization of plant p23-like proteins for their co-chaperone activities.2010 · DOI: 10.1007/s12192-010-0182-1
`At4g02450`	Acts as a co-chaperone for HSP90.	Characterization of plant p23-like proteins for their co-chaperone activities.2010 · DOI: 10.1007/s12192-010-0182-1

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: P0C8Z0`	Uncharacterized protein OsI_027940.	No verified direct reference in this release
`Os08g0359500`	Uncharacterized protein Os08g0359500.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031205 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006457 protein folding Biological Process

GO:0006950 response to stress Biological Process

GO:0009408 response to heat Biological Process

GO:0010449 root meristem growth Biological Process

GO:0010628 positive regulation of gene expression Biological Process

GO:0051131 chaperone-mediated protein complex assembly Biological Process

GO:0080037 negative regulation of cytokinin-activated signaling pathway Biological Process

GO:2000012 regulation of auxin polar transport Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT3G03773

ath:AT4G02450

dosa:Os08g0359500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.721

Rank 1 · TkA07G305830 · TK1151

Nucleus0.538

Rank 2 · TkA07G305830 · TK1151

Mitochondrion0.078

Rank 3 · TkA07G305830 · TK1151

Cell membrane0.053

Rank 4 · TkA07G305830 · TK1151

Endoplasmic reticulum0.047

Rank 5 · TkA07G305830 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21413SHQ1-like_CS6-65 aa

PF04969CS8-79 aa

PF21413SHQ1-like_CS95-125 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G305830	`PF21413`	SHQ1-like_CS	6	65	0.021	15.5
TkA07G305830	`PF04969`	CS	8	79	5.1e-09	37.7
TkA07G305830	`PF21413`	SHQ1-like_CS	95	125	0.021	15.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q6ID70`	Arabidopsis thaliana	sp\|Q6ID70\|P23B_ARATH Co-chaperone protein p23-2	47.600%	Swiss-Prot	Medium
`Q8L7U4`	Arabidopsis thaliana	sp\|Q8L7U4\|P23A_ARATH Co-chaperone protein p23-1	45.300%	Swiss-Prot	Medium
`P0C8Z0`	Oryza sativa subsp. indica	sp\|P0C8Z0\|Y8359_ORYSI Uncharacterized protein OsI_027940	51.200%	Swiss-Prot	High
`Q6YYB0`	Oryza sativa subsp. japonica	sp\|Q6YYB0\|Y8359_ORYSJ Uncharacterized protein Os08g0359500	51.200%	Swiss-Prot	High

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