TkA07G299710 | RubberDandelionOmics

Gene overview

TkA07G299710

Reference: TK1151 Chr: Chr07 Coordinates: 75371548-75376352 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2415 bp · TkA07G299710|TK1151|cDNA

ATGAACTCACCAACCATTGTGTTGACACTTTCAAAACTCATGCAATCTCAGTCTCCACCCTCAGATGTTTCCGCCGACAGATTTGGGGGTGTGACAGCATGGGTGGTTGCGGATGGTGGCAGAAAGTTCCGACGTGATGTAGACGCCGACGACATTCTTCTTGGCTGTGATATCTTCGATCGCCGAGAAGGAAGGCAGCCACCGGAGAATCTTACCTCGCCGGAGACAGCCTCTAGGCCGCCGGAAACCTCCTGCGCAAC...

CDS

Download CDS FASTA

2415 bp · TkA07G299710|TK1151|CDS

ATGAACTCACCAACCATTGTGTTGACACTTTCAAAACTCATGCAATCTCAGTCTCCACCCTCAGATGTTTCCGCCGACAGATTTGGGGGTGTGACAGCATGGGTGGTTGCGGATGGTGGCAGAAAGTTCCGACGTGATGTAGACGCCGACGACATTCTTCTTGGCTGTGATATCTTCGATCGCCGAGAAGGAAGGCAGCCACCGGAGAATCTTACCTCGCCGGAGACAGCCTCTAGGCCGCCGGAAACCTCCTGCGCAAC...

Protein

Download Protein FASTA

804 aa · TkA07G299710|TK1151|PROTEIN

MNSPTIVLTLSKLMQSQSPPSDVSADRFGGVTAWVVADGGRKFRRDVDADDILLGCDIFDRREGRQPPENLTSPETASRPPETSCATAKYRRRSSRLGVLSSCRDKSINRGCETFLAYVLDGRNEKSKKRVEDVKVVNEFPEVFPEDLSGLPPIRQVEFAIELVSGARPIARAPYRLAPTEMRELMAQLQELLDKGFIRPSSSPWVTIKNRYPLPRIDDLFDQLQGADYFSKIDLRSGYHQVRVKDEDVCKTAFQTRYGH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G299710`
TK1151 ID	TkA07G299710
OH-1004 ID	LXL04_037091
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	69.700
Protein coverage (%)	TK1151 86.940 / OH-1004 75.755 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA07G299710`
Location	Chr07:75371548-75376352 (+)
Description	Similar to TY3B-I: Transposon Ty3-I Gag-Pol polyprotein (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_037091` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006310 DNA recombination Biological Process GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0075523 viral translational frameshifting Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0003677 DNA binding Molecular Function GO:0003723 RNA binding Molecular Function GO:0003887 DNA-directed DNA polymerase activity Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004190 aspartic-type endopeptidase activity Molecular Function GO:0004519 endonuclease activity Molecular Function
KEGG gene cross-reference	sce:YGR109W-B sce:YIL082W-A spo:2542672 spo:2542797 spo:2543673 spo:3361218 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.617

Rank 1 · TkA07G299710 · TK1151

Nucleus0.323

Rank 2 · TkA07G299710 · TK1151

Mitochondrion0.109

Rank 3 · TkA07G299710 · TK1151

Cell membrane0.044

Rank 4 · TkA07G299710 · TK1151

Endoplasmic reticulum0.041

Rank 5 · TkA07G299710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00078RVT_1210-347 aa

PF31073DUF8803391-413 aa

PF17919RT_RNaseH_2410-503 aa

PF17917RT_RNaseH438-534 aa

PF24626SH3_Tf2-1668-721 aa

PF31073DUF8803685-722 aa

PF00385Chromo745-794 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G299710	`PF00078`	RVT_1	210	347	6.5e-34	118.3
TkA07G299710	`PF31073`	DUF8803	391	413	0.0063	17.1
TkA07G299710	`PF17919`	RT_RNaseH_2	410	503	2.2e-30	105.4
TkA07G299710	`PF17917`	RT_RNaseH	438	534	1.4e-33	115.9
TkA07G299710	`PF24626`	SH3_Tf2-1	668	721	9.3e-13	48.8
TkA07G299710	`PF31073`	DUF8803	685	722	0.0063	17.1
TkA07G299710	`PF00385`	Chromo	745	794	0.021	15.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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