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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G299570
Reference: TK1151 Chr: Chr07 Coordinates: 75320559-75323030 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2145 bp · TkA07G299570|TK1151|cDNA

GGTAGGTAAGTGTAATATTTATATCAACAAGCACCGTCTAGCCTCCCCCCGCCTTTCTCTCTCTAAAGCCAAACCTTTTTTTTTTTCCTCTCTTTCTCTCTGACGCACAGGACCATAGTCTCTCCCTTCTTTCAGAAGCTTCACCTCTCAGCATTTACTCCTCTGCTACTTCTTTCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGAAGTGCTGATCCACATTAAAGGTGAGCCGTGTTTAAGAAAAGTGT...

CDS

Download CDS FASTA

1500 bp · TkA07G299570|TK1151|CDS

ATGGGAAAGCTTCAACAAAATAATCTGGGTTCGATTGTTCTTGACCACCAACCCACCACCGCCGGCGGCGGTGGTGGGAATTTCAAGTTATGGTCGTCATGTCGTCGTTTAATCATTGACTCAATGAGATGCGGTGGAGGCAGGTATTATCGCCACCATGAAACTGTCGATTCTCCGGTGATAGAGAAACCGAAGGAGCAGAGAAAGGGGTTCGAATGCAGATCTGATGTGATTACGAACAATATCAACTGTAAGAGTAA...

Protein

Download Protein FASTA

499 aa · TkA07G299570|TK1151|PROTEIN

MGKLQQNNLGSIVLDHQPTTAGGGGGNFKLWSSCRRLIIDSMRCGGGRYYRHHETVDSPVIEKPKEQRKGFECRSDVITNNINCKSKKSEKLSELLRMSELWEEEEEMVKKKVAVLEELKRVVKGLQCGGGVELLSGAKDVRRLAKEDSDARTTLALLGAIPPLVAMLDSDDLDSQIAALYALLNLGIGNDANKAAIVKAGAVHKMLDLIKSSNQDLPNPDISAAIVANFLGLTALDSNKPIIGSSGAISFLIKTLKNST...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G299570
TK1151 IDTkA07G299570
OH-1004 IDLXL04_026009
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)63.100
Protein coverage (%)TK1151 100.000 / OH-1004 99.180
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G299570
LocationChr07:75320559-75323030 (-)
DescriptionSimilar to PUB12: U-box domain-containing protein 12
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026009 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007166 cell surface receptor signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0031648 protein destabilization Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0050777 negative regulation of immune response Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0090333 regulation of stomatal closure Biological Process
GO:2000022 regulation of jasmonic acid mediated signaling pathway Biological Process
GO:2000028 regulation of photoperiodism, flowering Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT1G23030
ath:AT1G71020
ath:AT2G28830
ath:AT3G46510
dosa:Os06g0102700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.393
Rank 1 · TkA07G299570 · TK1151
Nucleus0.330
Rank 2 · TkA07G299570 · TK1151
Cell membrane0.229
Rank 3 · TkA07G299570 · TK1151
Endoplasmic reticulum0.075
Rank 4 · TkA07G299570 · TK1151
Plastid0.070
Rank 5 · TkA07G299570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20649COG5_C29-42 aa
PF04738Lant_dehydr_N74-132 aa
PF25598ARM_PUB82-110 aa
PF20750PAP_NTPase87-124 aa
PF30196WRM1_C97-119 aa
PF20649COG5_C99-109 aa
PF16679CDT1_C107-120 aa
PF24768ARM_ARMC5134-282 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G299570PF20649COG5_C29420.6610.6
TkA07G299570PF04738Lant_dehydr_N741320.1111.3
TkA07G299570PF25598ARM_PUB821105.7e-0936.5
TkA07G299570PF20750PAP_NTPase871240.4910.9
TkA07G299570PF30196WRM1_C971194.7e-0729.8
TkA07G299570PF20649COG5_C991090.6610.6
TkA07G299570PF16679CDT1_C1071200.113.9
TkA07G299570PF24768ARM_ARMC51342822.2e-1144.4
TkA07G299570PF25598ARM_PUB1413935.7e-0936.5
TkA07G299570PF13513HEAT_EZ1571830.05914.7
TkA07G299570PF00514Arm1581861.4e-1247.9
TkA07G299570PF30196WRM1_C1602234.7e-0729.8
TkA07G299570PF30699ARM_GAC_21802930.00217.3
TkA07G299570PF30701ARMC61842640.07612.3
TkA07G299570PF00514Arm1902161.4e-1247.9
TkA07G299570PF22964ZER1-like_2nd2032790.2110.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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