TkA07G296730 | RubberDandelionOmics

Gene overview

TkA07G296730

Reference: TK1151 Chr: Chr07 Coordinates: 74453577-74455825 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2167 bp · TkA07G296730|TK1151|cDNA

GATGGTTTACAGGTTACTGTTGGGCGGCTGGAAATTTCATTCTCTAATCATCAAGAGTCGTCATATCATCATAAAAAATTAAGGTGCCATTTACACAGACATTACTTTCGCTTTTGCTTAATCATGGGTACCTCTTTCTGGAGTTGGTTTTCCCCACTACATCAAATTTCTTGTATTAACCCCATCATCTGTTCATTGTTACTCTTCTTCCCCATCTCTGATTCCGTGTACTTTGAGTTCACTGATTTTGCTGCAGACCA...

CDS

Download CDS FASTA

2103 bp · TkA07G296730|TK1151|CDS

GATGGTTTACAGGTTACTGTTGGGCGGCTGGAAATTTCATTCTCTAATCATCAAGAGTCGTCATATCATCATAAAAAATTAAGGTGCCATTTACACAGACATTACTTTCGCTTTTGCTTAATCATGGGTACCTCTTTCTGGAGTTGGTTTTCCCCACTACATCAAATTTCTTGTATTAACCCCATCATCTGTTCATTGTTACTCTTCTTCCCCATCTCTGATTCCGTGTACTTTGAGTTCACTGATTTTGCTGCAGACCA...

Protein

Download Protein FASTA

700 aa · TkA07G296730|TK1151|PROTEIN

DGLQVTVGRLEISFSNHQESSYHHKKLRCHLHRHYFRFCLIMGTSFWSWFSPLHQISCINPIICSLLLFFPISDSVYFEFTDFAADQTNIVYSGDAKPSGGAIEFNKVNKSVYRVAHTTYADGIQIWDSKSGKLSNFTTHFTFIVETQPSITPGHGFAFFLAPVGFQIPPNSGAGYLGLFNSSYTNSYRNKIVFVEFDSFSNVWDPPFPHVGINNNWLQSANSTAWNTSLHSGDPADVTVSYNGDTQMLTLSWRYGADNT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G296730`
TK1151 ID	TkA07G296730
OH-1004 ID	LXL04_038538
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	46.700
Protein coverage (%)	TK1151 87.143 / OH-1004 90.870 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G296730

Location Chr07:74453577-74455825 (-)

Description Similar to LECRK91: L-type lectin-domain containing receptor kinase IX.1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g10530`	Promotes hydrogen peroxide H(2)O(2) production and cell death.	No verified direct reference in this release
`At5g65600`	Promotes hydrogen peroxide H(2)O(2) production and cell death.	No verified direct reference in this release
`At5g55830`	Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici.	No verified direct reference in this release
`At3g53810`	Required during pollen development.	No verified direct reference in this release
`At2g37710`	L-type lectin-domain containing receptor kinase IV.1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038538 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002229 defense response to oomycetes Biological Process

GO:0006468 protein phosphorylation Biological Process

GO:0009555 pollen development Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0140426 pathogen-associated molecular pattern receptor signaling pathway Biological Process

GO:1900426 positive regulation of defense response to bacterium Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT3G53380

ath:AT3G53810

ath:AT5G10530

ath:AT5G55830

ath:AT5G65600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.831

Rank 1 · TkA07G296730 · TK1151

Endoplasmic reticulum0.098

Rank 2 · TkA07G296730 · TK1151

Cytoplasm0.079

Rank 3 · TkA07G296730 · TK1151

Nucleus0.042

Rank 4 · TkA07G296730 · TK1151

Lysosome / Vacuole0.042

Rank 5 · TkA07G296730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00139Lectin_legB76-316 aa

PF03388Lectin_leg-like124-162 aa

PF18483Lectin_L-type_dom195-297 aa

PF03388Lectin_leg-like237-296 aa

PF07387Seadorna_VP7307-353 aa

PF00069Pkinase389-655 aa

PF07714PK_Tyr_Ser-Thr391-655 aa

PF03109ABC1394-436 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G296730	`PF00139`	Lectin_legB	76	316	1.4e-62	212.1
TkA07G296730	`PF03388`	Lectin_leg-like	124	162	0.14	12.3
TkA07G296730	`PF18483`	Lectin_L-type_dom	195	297	0.0019	18.8
TkA07G296730	`PF03388`	Lectin_leg-like	237	296	0.14	12.3
TkA07G296730	`PF07387`	Seadorna_VP7	307	353	0.22	11.2
TkA07G296730	`PF00069`	Pkinase	389	655	9.5e-49	166.9
TkA07G296730	`PF07714`	PK_Tyr_Ser-Thr	391	655	6.4e-46	157.5
TkA07G296730	`PF03109`	ABC1	394	436	0.01	15.7
TkA07G296730	`PF07387`	Seadorna_VP7	477	530	0.22	11.2
TkA07G296730	`PF03109`	ABC1	488	540	0.01	15.7
TkA07G296730	`PF01636`	APH	499	537	0.13	12.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LXA5`	Arabidopsis thaliana	sp\|Q9LXA5\|LRK91_ARATH L-type lectin-domain containing receptor kinase IX.1	53.000%	Swiss-Prot	High
`Q9LSL5`	Arabidopsis thaliana	sp\|Q9LSL5\|LRK92_ARATH L-type lectin-domain containing receptor kinase IX.2	51.600%	Swiss-Prot	High
`Q9FHG4`	Arabidopsis thaliana	sp\|Q9FHG4\|LRKS7_ARATH Probable L-type lectin-domain containing receptor kinase S.7	36.400%	Swiss-Prot	Medium
`Q9M345`	Arabidopsis thaliana	sp\|Q9M345\|LRK42_ARATH L-type lectin-domain containing receptor kinase IV.2	36.400%	Swiss-Prot	Medium
`O80939`	Arabidopsis thaliana	sp\|O80939\|LRK41_ARATH L-type lectin-domain containing receptor kinase IV.1	34.800%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card