TkA07G292640 | RubberDandelionOmics

Gene overview

TkA07G292640

Reference: TK1151 Chr: Chr07 Coordinates: 73362370-73368381 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2872 bp · TkA07G292640|TK1151|cDNA

GTCCATTTCGTTTAATTTCAACAGGCCGTCCATTTCATTTAATTTCCTCTTCCACCTATTCGCTTTCCCATTTTATTATTTATCCATCTTCCTCTCACTGCCTCTGCTTTGACAGTACGTTGATCCCAAAAATTGGTCTTTTTGGCCGACGACTGCTGAGCTCTAGACAGTCGTCTCTCATCTTTTATCTCACGCATATGTTTACCTCCCTTTCTTCTATTTGTACTTGTGATGTGGTAAATATGCATTCAAATCTCTGC...

CDS

Download CDS FASTA

1404 bp · TkA07G292640|TK1151|CDS

ATGGGGAAAACCATGGTTGCTTTTAAGCGTCTGGACCGTAACTATGGTCAAGGAGACCCTGAGTTTTGGAAAGAGATCCTAATGCTTGCTTCGTACAAACATGAAAATCTCATCACTCTCGAGGGTTTTTGCAACGAGAATGGCGAAAAGATCCTTGTGTACGAGCATGCATTTCATGGAAGCCTTGATCGCCACTTAAGTAGCACTACTCTCACATGGAGGCAACGTCTCAAAATATGCCTTGGGGCTGCAAGGGGACT...

Protein

Download Protein FASTA

467 aa · TkA07G292640|TK1151|PROTEIN

MGKTMVAFKRLDRNYGQGDPEFWKEILMLASYKHENLITLEGFCNENGEKILVYEHAFHGSLDRHLSSTTLTWRQRLKICLGAARGLCHLHDPKKTQQRVIHRDIKSSNILLEENWNAKLSDMGLSKLGPANQIHTFIISNVVGTPGYIDPLYMETYSLTKESDVYSFGVVLFEVLCGRQCFKYNNGRWQSLVQLWKKNYKQKKLNDIIFEDLKQYMDPSSLETFSDIAYQCLHKSREGRPKMSHVVKKLEIALQFQERS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G292640`
TK1151 ID	TkA07G292640
OH-1004 ID	LXL04_029254
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 99.143 / OH-1004 54.923 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G292640

Location Chr07:73362370-73368381 (+)

Description Similar to ANX2: Receptor-like protein kinase ANXUR2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g39000`	Putative receptor-like protein kinase At5g39000.	No verified direct reference in this release
`At5g28680`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release
`At5g38990`	Probable receptor-like protein kinase At5g38990.	No verified direct reference in this release
`At3g04690`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release
`At1g30570`	Probable receptor-like protein kinase At1g30570.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029254 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009741 response to brassinosteroid Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0010038 response to metal ion Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009536 plastid Cellular Component

GO:0016324 apical plasma membrane Cellular Component

GO:0043680 filiform apparatus Cellular Component

GO:0090404 pollen tube tip Cellular Component

KEGG gene cross-reference

ath:AT3G04690

ath:AT3G46290

ath:AT5G28680

ath:AT5G38990

ath:AT5G39000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.488

Rank 1 · TkA07G292640 · TK1151

Cell membrane0.336

Rank 2 · TkA07G292640 · TK1151

Nucleus0.325

Rank 3 · TkA07G292640 · TK1151

Endoplasmic reticulum0.059

Rank 4 · TkA07G292640 · TK1151

Lysosome / Vacuole0.043

Rank 5 · TkA07G292640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714PK_Tyr_Ser-Thr3-250 aa

PF00069Pkinase4-248 aa

PF17014Mad3_BUB1_I_2190-304 aa

PF21589AP5B1_barrel220-238 aa

PF21589AP5B1_barrel252-282 aa

PF14299PP2307-441 aa

PF26742DUF8247358-381 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G292640	`PF07714`	PK_Tyr_Ser-Thr	3	250	1.1e-34	120.6
TkA07G292640	`PF00069`	Pkinase	4	248	6.6e-36	124.8
TkA07G292640	`PF17014`	Mad3_BUB1_I_2	190	304	0.22	12.4
TkA07G292640	`PF21589`	AP5B1_barrel	220	238	0.1	13.3
TkA07G292640	`PF21589`	AP5B1_barrel	252	282	0.1	13.3
TkA07G292640	`PF14299`	PP2	307	441	7.1e-07	30.0
TkA07G292640	`PF26742`	DUF8247	358	381	0.25	12.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FID8`	Arabidopsis thaliana	sp\|Q9FID8\|Y5900_ARATH Putative receptor-like protein kinase At5g39000	44.900%	Swiss-Prot	Medium
`Q3E8W4`	Arabidopsis thaliana	sp\|Q3E8W4\|ANX2_ARATH Receptor-like protein kinase ANXUR2	46.400%	Swiss-Prot	Medium
`Q9FID9`	Arabidopsis thaliana	sp\|Q9FID9\|Y5389_ARATH Probable receptor-like protein kinase At5g38990	44.200%	Swiss-Prot	Medium
`Q9SR05`	Arabidopsis thaliana	sp\|Q9SR05\|ANX1_ARATH Receptor-like protein kinase ANXUR1	45.600%	Swiss-Prot	Medium
`Q9SA72`	Arabidopsis thaliana	sp\|Q9SA72\|Y1357_ARATH Probable receptor-like protein kinase At1g30570	43.600%	Swiss-Prot	Medium

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