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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G290780
Reference: TK1151 Chr: Chr07 Coordinates: 72944684-72948171 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3159 bp · TkA07G290780|TK1151|cDNA

CTAATTTTCCCTGTTTCCAAATCGAAAATATCAAAACAGTCTTGATTGGCTTCCTCCGCCCAAACCCTACTCCAGGGTTTTGCGGTTTAACAACCCAAATAGCAAACCCGCTACCGAGATCTCGTGGCCCTTTCTCAGACGCACCAAAACTCATGGCACCGTCGCCACCACAACCTCCTTCTTCAACAACGTCGCCAAAATGAAGCTTTTCCGTTACAAATTCATCGAGAAAAACCTTCTCCCAATCACACCCGCCTCTT...

CDS

Download CDS FASTA

2451 bp · TkA07G290780|TK1151|CDS

ATGGATTTAAAGAGGCTCAGAATCTTCAAATTTTCACCCTTGAAGAGGAACCCCTTTCAATCAGCCTCTACCCAACACAAGCATTCAAAGTCATCCCCCAAAAAAACCCCAGTGCAGCTCGAGAATCAGGATTCGATCAAGTGGGTAACTTCAATTCTATCAAACCCGTCTCTAGATTCATCTAAGTGTAAAGATATAGTCACTCATTTGTCTCCACAACAGTTCGATAGTGTGTTCTCCGATATTAGGTATTCCGTGAA...

Protein

Download Protein FASTA

816 aa · TkA07G290780|TK1151|PROTEIN

MDLKRLRIFKFSPLKRNPFQSASTQHKHSKSSPKKTPVQLENQDSIKWVTSILSNPSLDSSKCKDIVTHLSPQQFDSVFSDIRYSVKPRTALSFFYFASRSCGFKFTIKSYCLLIHLLLASKLDDPARLLLIQLIDDKLPVLLHDPKNKHIEIATAFMEFHFSSDSLPTPTFDHLIHVYCTQFKSFGLDLASDVVRLIAKKHLFPSLTTCNILLTSLVKSNLLQKTHEIFNILRIGLQPDVYLFTTAINALCKDRKIKDA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G290780
TK1151 IDTkA07G290780
OH-1004 IDLXL04_029242
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 32.966 / OH-1004 30.638
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G290780
LocationChr07:72944684-72948171 (+)
DescriptionSimilar to At4g19440: Pentatricopeptide repeat-containing protein At4g19440, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g19440 Pentatricopeptide repeat-containing protein At4g19440, chloroplastic. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029242 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000965 mitochondrial RNA 3'-end processing Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT4G19440
ath:AT5G59900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.828
Rank 1 · TkA07G290780 · TK1151
Plastid0.082
Rank 2 · TkA07G290780 · TK1151
Nucleus0.054
Rank 3 · TkA07G290780 · TK1151
Cytoplasm0.036
Rank 4 · TkA07G290780 · TK1151
Cell membrane0.011
Rank 5 · TkA07G290780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14225MOR2-PAG1_C37-235 aa
PF13041PPR_2171-219 aa
PF12854PPR_1171-180 aa
PF13812PPR_3171-217 aa
PF17177PPR_long188-229 aa
PF12854PPR_1202-230 aa
PF28722WHD_Sfc3_5th204-226 aa
PF13041PPR_2205-231 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G290780PF14225MOR2-PAG1_C372350.3611.2
TkA07G290780PF13041PPR_21712191.3e-183595.8
TkA07G290780PF12854PPR_11711801.8e-159517.8
TkA07G290780PF13812PPR_31712175.1e-81267.4
TkA07G290780PF17177PPR_long1882297.6e-50169.9
TkA07G290780PF12854PPR_12022301.8e-159517.8
TkA07G290780PF28722WHD_Sfc3_5th2042260.0009620.1
TkA07G290780PF13041PPR_22052311.3e-183595.8
TkA07G290780PF01535PPR2092311.3e-126405.1
TkA07G290780PF29070MSC6_N2092974.1e-41142.1
TkA07G290780PF24760TPR_IF140_C2252682.1e-1041.8
TkA07G290780PF00637Clathrin2262954.6e-0523.9
TkA07G290780PF23276TPR_242312903.1e-46157.3
TkA07G290780PF13812PPR_32342845.1e-81267.4
TkA07G290780PF08579RPM22342530.01316.7
TkA07G290780PF12854PPR_12362681.8e-159517.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q940A6Arabidopsis thalianasp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440, chloroplastic48.600%Swiss-ProtLow

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