TkA07G282330 | RubberDandelionOmics

Gene overview

TkA07G282330

Reference: TK1151 Chr: Chr07 Coordinates: 70636997-70650390 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1395 bp · TkA07G282330|TK1151|cDNA

AGAATCACCATGAAACAACAGTCACAACCTCATCTTCCACCATGGATCCTCTTTAAATTCAGCAGTTGGGTTTGTTTTCTGTGTTTCTTCTGCTTAGAGTTTCTTCAGAGATTTCTGACTCACGGTTCCGGGTTAAGACACTACCAGGTTTGCTTGGTGATATGCCTTTCACACTCGAAACTGGGAGAATCCGATGAGGTGCAGTTATTTTACTACTTCGTTGAGTCTGAAGGGAGCCCGAAAGACGACCCTCTTATGCT...

CDS

Download CDS FASTA

1386 bp · TkA07G282330|TK1151|CDS

ATGAAACAACAGTCACAACCTCATCTTCCACCATGGATCCTCTTTAAATTCAGCAGTTGGGTTTGTTTTCTGTGTTTCTTCTGCTTAGAGTTTCTTCAGAGATTTCTGACTCACGGTTCCGGGTTAAGACACTACCAGGTTTGCTTGGTGATATGCCTTTCACACTCGAAACTGGGAGAATCCGATGAGGTGCAGTTATTTTACTACTTCGTTGAGTCTGAAGGGAGCCCGAAAGACGACCCTCTTATGCTTTGGCTCAC...

Protein

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462 aa · TkA07G282330|TK1151|PROTEIN

MKQQSQPHLPPWILFKFSSWVCFLCFFCLEFLQRFLTHGSGLRHYQVCLVICLSHSKLGESDEVQLFYYFVESEGSPKDDPLMLWLTGGPGCSGLSALLYEIGPFTINYENSTLEKTMLEINPHSWTKVANIIFLDQPAGTGFSYAKTPEAYITNDTLSTTYTYHFLRKWLVEHPKFLNNPMYIGADSYAGIMVPMIVEKIYNGNEVGEQPEINIKGYVLGNPLTDRSGDFKSRIPFAHRTALLSDEIYKSTKTNCLGKY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G282330`
TK1151 ID	TkA07G282330
OH-1004 ID	LXL04_029174
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	82.800
Protein coverage (%)	TK1151 93.723 / OH-1004 84.513 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G282330

Location Chr07:70636997-70650390 (-)

Description Similar to SCPL17: Serine carboxypeptidase-like 17

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g33540`	Probable carboxypeptidase.	No verified direct reference in this release
`At3g12203`	Probable carboxypeptidase.	No verified direct reference in this release
`At5g09640`	Involved in plants secondary metabolism.	The sng2 mutant of Arabidopsis is defective in the gene encoding the serine carboxypeptidase-like protein sinapoylglucose:choline sinapoyltransferase.2001 · DOI: 10.1046/j.1365-313x.2001.01123.x Benzoylation and sinapoylation of glucosinolate R-groups in Arabidopsis.2012 · DOI: 10.1111/j.1365-313x.2012.05096.x
`At1g73300`	Probable carboxypeptidase.	No verified direct reference in this release
`At3g12220`	Probable carboxypeptidase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_029174 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009698 phenylpropanoid metabolic process Biological Process

GO:0019748 secondary metabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0004185 serine-type carboxypeptidase activity Molecular Function

GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups Molecular Function

GO:0016752 sinapoyltransferase activity Molecular Function

GO:0016754 sinapoylglucose-malate O-sinapoyltransferase activity Molecular Function

GO:0047158 sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G33540

ath:AT1G73300

ath:AT2G22990

ath:AT3G12203

ath:AT3G12220

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.473

Rank 1 · TkA07G282330 · TK1151

Endoplasmic reticulum0.176

Rank 2 · TkA07G282330 · TK1151

Extracellular0.173

Rank 3 · TkA07G282330 · TK1151

Cytoplasm0.130

Rank 4 · TkA07G282330 · TK1151

Cell membrane0.091

Rank 5 · TkA07G282330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00450Peptidase_S1058-461 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G282330	`PF00450`	Peptidase_S10	58	461	7.8e-108	362.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C7Z9`	Arabidopsis thaliana	sp\|Q9C7Z9\|SCP18_ARATH Serine carboxypeptidase-like 18	45.600%	Swiss-Prot	Medium
`Q9C7D6`	Arabidopsis thaliana	sp\|Q9C7D6\|SCP17_ARATH Serine carboxypeptidase-like 17	42.100%	Swiss-Prot	Medium
`Q8VZU3`	Arabidopsis thaliana	sp\|Q8VZU3\|SCP19_ARATH Serine carboxypeptidase-like 19	42.800%	Swiss-Prot	Medium
`Q9CAU3`	Arabidopsis thaliana	sp\|Q9CAU3\|SCPL2_ARATH Serine carboxypeptidase-like 2	43.300%	Swiss-Prot	Medium
`Q9C7D4`	Arabidopsis thaliana	sp\|Q9C7D4\|SCP16_ARATH Serine carboxypeptidase-like 16	52.700%	Swiss-Prot	High

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