TkA07G266290 | RubberDandelionOmics

Gene overview

TkA07G266290

Reference: TK1151 Chr: Chr07 Coordinates: 66517375-66519473 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA No cDNA sequence available

cDNA

No cDNA sequence is available for this reference.

CDS

Download CDS FASTA

714 bp · TkA07G266290|TK1151|CDS

ATGGATCGCGATGCTACTGCGGATGTTAATGCTCCTCACTCCATGGGGACAACAATCATCGGAGTTACTTACAACGGTGGCGTTATTCTGGGTGCCGACTCCCGGACCAGCACCGGGCTGTACGTCGCTAATCGAGCGTCCGATAAGATCACACAGCTGACCGACAATGTCTACATCTGTCGCTCTGGATCGGCTGCAGATTCTCAAATTGTCTCGGATTATGTCAGATACTTTCTTCATCAGCACACGATTCAGCTTGG...

Protein

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237 aa · TkA07G266290|TK1151|PROTEIN

MDRDATADVNAPHSMGTTIIGVTYNGGVILGADSRTSTGLYVANRASDKITQLTDNVYICRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNMLQTGIIVGGWDKYEGGKIYGIPLGGTILEQPFAIGGSGSSYLYGFFDQAWKDGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVIINSEGVTRNFYPGDKLPLWHDEVEAHGSLLDILNASNPEPMTT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G266290`
TK1151 ID	TkA07G266290
OH-1004 ID	LXL04_029047
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G266290

Location Chr07:66517375-66519473 (+)

Description Similar to PBA1: Proteasome subunit beta type-6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g31300`	The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_029047 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0010043 response to zinc ion Biological Process

GO:0010363 regulation of plant-type hypersensitive response Biological Process

GO:0010498 proteasomal protein catabolic process Biological Process

GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0000502 proteasome complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005839 proteasome core complex Cellular Component

KEGG gene cross-reference

ath:AT4G31300

bta:510069

ddi:DDB_G0267390

nta:107815086

spo:2540878

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.757

Rank 1 · TkA07G266290 · TK1151

Nucleus0.653

Rank 2 · TkA07G266290 · TK1151

Mitochondrion0.052

Rank 3 · TkA07G266290 · TK1151

Peroxisome0.041

Rank 4 · TkA07G266290 · TK1151

Cell membrane0.039

Rank 5 · TkA07G266290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00227Proteasome15-195 aa

PF20787SPP1_GP23-1149-171 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G266290	`PF00227`	Proteasome	15	195	1.9e-49	168.6
TkA07G266290	`PF20787`	SPP1_GP23-1	149	171	0.078	13.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8LD27`	Arabidopsis thaliana	sp\|Q8LD27\|PSB6_ARATH Proteasome subunit beta type-6	89.500%	Swiss-Prot	High

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