TkA07G262450 | RubberDandelionOmics

Gene overview

TkA07G262450

Reference: TK1151 Chr: Chr07 Coordinates: 65614637-65618244 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

480 bp · TkA07G262450|TK1151|cDNA

CAACCCAAATCAGAAAACGTTCGTCTGGTTCATACAGACAGAGCAAGCAATTGTGAAATTGTGCTTCACAACATACAGCTTTCTCTACCTGATCTTATGAAAGCCATCCTTGAGTTAGATTCTTCGGCTGTAAGTGTTGATCAAGTTTACAATATTATCGAAATCTGTCCAACAAATGAAGAAATGGGGATGTTAAAGAGCTATACAGGAGACGAGAAAAAACTTGGACAGTGTGAGCAGTTCTTCTTGGAGTGTGCAAA...

CDS

Download CDS FASTA

480 bp · TkA07G262450|TK1151|CDS

CAACCCAAATCAGAAAACGTTCGTCTGGTTCATACAGACAGAGCAAGCAATTGTGAAATTGTGCTTCACAACATACAGCTTTCTCTACCTGATCTTATGAAAGCCATCCTTGAGTTAGATTCTTCGGCTGTAAGTGTTGATCAAGTTTACAATATTATCGAAATCTGTCCAACAAATGAAGAAATGGGGATGTTAAAGAGCTATACAGGAGACGAGAAAAAACTTGGACAGTGTGAGCAGTTCTTCTTGGAGTGTGCAAA...

Protein

Download Protein FASTA

160 aa · TkA07G262450|TK1151|PROTEIN

QPKSENVRLVHTDRASNCEIVLHNIQLSLPDLMKAILELDSSAVSVDQVYNIIEICPTNEEMGMLKSYTGDEKKLGQCEQFFLECAKIPRIEIKLRVFAFTITFRTRVNGFKGTRNTIKDATKEIRESKKLVKIMQIILTMGNKLNAGTIQGSAQGFKLD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G262450`
TK1151 ID	TkA07G262450
OH-1004 ID	LXL04_029026
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 18.713 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G262450

Location Chr07:65614637-65618244 (-)

Description Similar to FH14: Formin-like protein 14

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g31810`	Formin-like protein 14.	No verified direct reference in this release
`At5g07770`	Formin-like protein 16.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0119300`	Formin-like protein 3.	No verified direct reference in this release
`Os02g0794900`	Formin-like protein 7.	No verified direct reference in this release
`Os08g0280200`	Formin-like protein 6.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029026 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009556 microsporogenesis Biological Process

GO:0051017 actin filament bundle assembly Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005819 spindle Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009524 phragmoplast Cellular Component

GO:0009574 preprophase band Cellular Component

GO:0015630 microtubule cytoskeleton Cellular Component

GO:0003779 actin binding Molecular Function

GO:0004721 phosphoprotein phosphatase activity Molecular Function

GO:0008017 microtubule binding Molecular Function

KEGG gene cross-reference

ath:AT1G31810

ath:AT2G25050

ath:AT3G32400

dosa:Os02g0794900

dosa:Os10g0119300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.744

Rank 1 · TkA07G262450 · TK1151

Nucleus0.181

Rank 2 · TkA07G262450 · TK1151

Cell membrane0.161

Rank 3 · TkA07G262450 · TK1151

Golgi apparatus0.057

Rank 4 · TkA07G262450 · TK1151

Mitochondrion0.035

Rank 5 · TkA07G262450 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02181FH22-160 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G262450	`PF02181`	FH2	2	160	8.3e-49	167.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C6S1`	Arabidopsis thaliana	sp\|Q9C6S1\|FH14_ARATH Formin-like protein 14	58.900%	Swiss-Prot	High
`Q9FF15`	Arabidopsis thaliana	sp\|Q9FF15\|FH16_ARATH Formin-like protein 16	47.500%	Swiss-Prot	Medium
`Q7G6K7`	Oryza sativa subsp. japonica	sp\|Q7G6K7\|FH3_ORYSJ Formin-like protein 3	58.200%	Swiss-Prot	High
`Q6K8Z4`	Oryza sativa subsp. japonica	sp\|Q6K8Z4\|FH7_ORYSJ Formin-like protein 7	52.500%	Swiss-Prot	High
`Q6ZCX3`	Oryza sativa subsp. japonica	sp\|Q6ZCX3\|FH6_ORYSJ Formin-like protein 6	50.000%	Swiss-Prot	High

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